| unitestFilter-methods {xps} | R Documentation |
This method initializes the Unitest Filter.
Applying an unitest such as the t.test to two groups returns the p-value for the test
and the value of the t-statistic. The Unitest Filter allows to select only rows satisfying
e.g. a certain p-value as cutoff.
The Unitest Filter flags all rows with: flag = (variable <= cutoff)
Usage
unitestFilter(object)
unitestFilter(object, value)<-
object |
object of class UniFilter. |
value |
character vector c(cutoff, variable). |
The method unitestFilter initializes the following parameters:
cutoff: | the cutoff level for the filter. | |
variable: | variable="pval" (default): p-value. |
|
variable="stat": univariate statistic. |
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variable="padj": optional adjusted p-value. |
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variable="pcha": optional p-value obtained by permutations. |
An initialized UniFilter object.
Christian Stratowa
unifltr <- UniFilter() unitestFilter(unifltr) <- c(0.01,"pval") str(unifltr)