| CallTreeSet-class {xps} | R Documentation |
This class provides the link to the ROOT call file and
the ROOT trees contained therein. It extends class ProcesSet.
Objects are created using functions mas5.call or dabg.call, respectively.
calltype:"character" representing the call type,
i.e. ‘mas5’ or ‘dabg’.detcall:"data.frame". The data.frame can contain
the detection calls stored in ROOT call trees.scheme:"SchemeTreeSet" providing access to
ROOT scheme file.data:"data.frame". The data.frame can contain
the data (i.e. p-values) stored in ROOT call trees.params:"list" representing relevant parameters.setname:"character" representing the name to the
ROOT file subdirectoy where the ROOT call trees are stored,
usually ‘CallTreeSet’.settype:"character" describing the type of treeset
stored in setname, usually ‘preprocess’.rootfile:"character" representing the name
of the ROOT call file, including full path.filedir:"character" describing the full path to
the system directory where rootfile is stored.numtrees:"numeric" representing the number of
ROOT trees stored in subdirectoy setname.treenames:"list" representing the names of the
ROOT trees stored in subdirectoy setname.
Class "ProcesSet", directly.
Class "TreeSet", by class "ProcesSet", distance 2.
signature(object = "CallTreeSet"): exports detection call data from
ROOT call file and and saves as data.frame detcall.signature(object = "CallTreeSet"): exports call p-values from
ROOT call file and and saves as data.frame data.signature(x = "CallTreeSet"): creates a barplot of percent present
and absent calls.signature(object = "CallTreeSet"): extracts the detection call data.frame.signature(object = "CallTreeSet", value = "data.frame"): replaces the detection call data.frame.signature(object = "CallTreeSet"): extracts the detection p-value data.frame.signature(object = "CallTreeSet", value = "data.frame"): replaces the detection p-value data.frame.signature(object = "CallTreeSet"): replaces data.frame detcall
with an empty data.frame of dim(0,0).signature(object = "CallTreeSet"): replaces data.frame data
with an empty data.frame of dim(0,0).signature(object = "CallTreeSet"): extracts a subset of columns
from data.frame detcall.Christian Stratowa
related classes DataTreeSet, ExprTreeSet.
showClass("CallTreeSet")