Analysis of Sleep Data

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Documentation for package ‘rsleep’ version 1.0.12

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

a7	A7 spindle detection algorithm
adanorm	Adaptive Normalization of a Signal
bandpass	Bandpass Filter Function
bands_psd	Compute power spectral density of bands listed in the bands argument.
chambon2018	Deep Learning Architecture for Temporal Sleep Stage Classification model implementation in Keras.
check_events	Check events dataframe format compliance.
choi2018	Convolutional neural network for real-time apnea-hypopnea event detection during sleep
ckappa	Computes Cohen's Kappa for agreement in the case of 2 raters.
clean_oximetry	Clean Oximetry Signal
create_xts	Create an XTS Object from Resampled Signals
detect_apneic_events	Detect Apneic Events in SpO2 Signal Data
detect_rem	Detection of Rapid-Eye Movements (REMs)
detect_rpeaks	Detect R peaks in a raw ECG signal.
epochs	Split signals into consecutive, non-overlaping epochs according to an events dataframe or an epoch duration.
hypnogram	Filter and reorder an events dataframe or a hypnodensity to keep only sleep stages related-events.
normalize_cycles	Normalize sleep cycles scored on Noxturnal software from start and stop flags to unique events.
periods	Get a dataframe of sleep periods from a hypnogram, continuous or by stages.
plot_event	Highlight a scored event over a signal.
plot_hypnodensity	Plot a hypnodensity graph.
plot_hypnogram	Plot a hypnogram from an events dataframe.
psm	Power spectral density using adaptive sine multitaper.
pwelch	Power spectral density using Welch's method.
read_events_compumedics	Read a stages export from Compumedics software in .txt format.
read_events_ndb	Read events from a Resmed Noxturnal .ndb file.
read_events_noxturnal	Read a Noxturnal events file (Unicode CSV format)
read_events_profusion	Read a annotation file from Compumedics Profusion software in XML format.
read_events_sleepedfx	Read a SleepEDFX events file EDF+
read_mdf	Read a Morpheo Data Format (MDF) directory to a list.
schwabedal2018	Automated Classification of Sleep Stages in Mice with Deep Learning model implementation in Keras.
score_mice	Score mice sleep from European Data Format (EDF) files.
score_psg	Score 30 seconds epochs from European Data Format (EDF) files.
segmentation	Split signals into consecutive, overlapping segments.
smooth_hypnogram	Smooth hypnogram epoch, simulating human scorers behaviour.
smooth_liang2012	Smooth hypnogram according to the 11 rules described by Liang & Al.
spectrogram	Plot the spectrogram of signal.
stages_stats	Get stages related statistics in a named vector.
train_batches	Trains a model from files batches.
transitions	Count and format stages transitions.
tst90	Compute TST90, the percentage of time during sleep with an oxygen saturation below 90.
write_batches_mice	Write batches from mice records
write_batches_psg	Generates files batches from PSG data.
write_channel	Write a timeserie to disk using Morpheo Data Format (MDF) guidelines.
write_hypnogram_compumedics	Write a XML file containing scored stages for Compumedics software.
write_mdf	Write a European Data Format (EDF) record file to disk using Morpheo Data Format (MDF) guidelines