# Exploring Biological Relevance of Environmental Chemistry Observations

## Documentation for package ‘toxEval’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

as.toxEval | toxEval helper functions
clean_endPoint_info | clean_endPoint_info
create_toxEval | Load and check toxEval data
endpoint_hits | Rank endpoints by category
endpoint_hits_DT | Rank endpoints by category
end_point_info | Endpoint information from ToxCast
explore_endpoints | Explore data in the Shiny Application
filter_groups | Filter endPoints based on groups and assays.
flags | ToxCast Chemical Information
get_ACC | Get the ACC values for a selection of chemicals
get_chemical_summary | Compute EAR values
get_concentration_summary | Create concentration summary
graph_chem_data | Prepare boxplot data
hits_by_groupings | Biological hits per category
hits_by_groupings_DT | Biological hits per category
hits_summary | Summary of hits per site/category
hits_summary_DT | Summary of hits per site/category
make_tox_map | Create an interactive map of the data
map_tox_data | Create an interactive map of the data
plot_chemical_boxplots | Grouped Boxplots
plot_tox_boxplots | Grouped Boxplots
plot_tox_endpoints | EndPoint boxplots
plot_tox_endpoints2 | EndPoint boxplots with faceting option
plot_tox_heatmap | Plot EAR heat maps
plot_tox_stacks | Plot stacked bar charts
rank_sites | Rank sites by EAR
rank_sites_DT | Rank sites by EAR
remove_flags | Remove endpoints with specific data quality flags from data
side_by_side_data | Prepare boxplot data
summary.toxEval | Summary of tox_list
ToxCast_ACC | ACC values included with toxEval. See 'vignette("Setting up toxEval package data", package = "toxEval")' for more information on how the data was aggregated.
tox_boxplot_data | Prepare boxplot data
tox_chemicals | ToxCast Chemical Information