Last updated on 2026-06-02 09:54:03 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.9 | OK | ||||
| r-devel-linux-x86_64-debian-gcc | 0.3.9 | 23.76 | 139.75 | 163.51 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.9 | 63.00 | 352.78 | 415.78 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.9 | 66.00 | 325.58 | 391.58 | NOTE | |
| r-devel-windows-x86_64 | 0.3.9 | 41.00 | 268.00 | 309.00 | OK | |
| r-patched-linux-x86_64 | 0.3.9 | 34.55 | 186.45 | 221.00 | OK | |
| r-release-linux-x86_64 | 0.3.9 | 33.55 | 185.66 | 219.21 | OK | |
| r-release-macos-arm64 | 0.3.9 | 8.00 | 47.00 | 55.00 | OK | |
| r-release-macos-x86_64 | 0.3.9 | 23.00 | 200.00 | 223.00 | OK | |
| r-release-windows-x86_64 | 0.3.9 | 39.00 | 256.00 | 295.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.9 | 7.00 | 47.00 | 54.00 | OK | |
| r-oldrel-macos-x86_64 | 0.3.9 | 26.00 | 218.00 | 244.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.9 | 54.00 | 319.00 | 373.00 | OK |
Version: 0.3.9
Check: tests
Result: ERROR
Running ‘testthat.R’ [23s/30s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> suppressPackageStartupMessages(library(metacoder))
>
> test_check("metacoder")
Saving _problems/test--calculations-155.R
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 530 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test--parsers_and_writers.R:104:3',
'test--parsers_and_writers.R:203:3', 'test--simulated_pcr.R:19:3',
'test--taxmap_parsers.R:139:3', 'test--taxmap_parsers.R:288:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test--calculations.R:153:3'): Comparing groups of samples ───────────
Error in `if (p < 0.99999) 1 - p else F(z, lower.tail = FALSE)`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. └─metacoder::compare_groups(...) at test--calculations.R:153:3
2. └─base::lapply(...)
3. └─metacoder (local) FUN(X[[i]], ...)
4. └─metacoder (local) one_comparison(combinations[[i]][1], combinations[[i]][2])
5. └─base::lapply(...)
6. └─metacoder (local) FUN(X[[i]], ...)
7. ├─base::as.list(func(abund_1, abund_2))
8. └─metacoder (local) func(abund_1, abund_2)
9. ├─stats::wilcox.test(abund_1, abund_2, exact = FALSE)
10. └─stats:::wilcox.test.default(abund_1, abund_2, exact = FALSE)
11. └─stats:::.wilcox_test_two_pval_asymp(...)
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 530 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.9
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘R6’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc