CRAN Package Check Results for Package mice

Last updated on 2025-09-07 09:49:17 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	3.18.0	38.38	216.44	254.82	ERROR
r-devel-linux-x86_64-debian-gcc	3.18.0	26.54	164.37	190.91	OK
r-devel-linux-x86_64-fedora-clang	3.18.0			448.38	OK
r-devel-linux-x86_64-fedora-gcc	3.18.0			425.19	OK
r-devel-windows-x86_64	3.18.0	43.00	243.00	286.00	ERROR
r-patched-linux-x86_64	3.18.0	41.26	235.30	276.56	OK
r-release-linux-x86_64	3.18.0	35.00	237.70	272.70	OK
r-release-macos-arm64	3.18.0			110.00	OK
r-release-macos-x86_64	3.18.0			182.00	OK
r-release-windows-x86_64	3.18.0	42.00	295.00	337.00	OK
r-oldrel-macos-arm64	3.18.0			110.00	OK
r-oldrel-macos-x86_64	3.18.0			183.00	OK
r-oldrel-windows-x86_64	3.18.0	56.00	376.00	432.00	OK

Check Details

Version: 3.18.0
Check: examples
Result: ERROR Running examples in ‘mice-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: D3 > ### Title: Compare two nested models using D3-statistic > ### Aliases: D3 > > ### ** Examples > > # Compare two linear models: > imp <- mice(nhanes2, seed = 51009, print = FALSE) > mi1 <- with(data = imp, expr = lm(bmi ~ age + hyp + chl)) > mi0 <- with(data = imp, expr = lm(bmi ~ age + hyp)) > D3(mi1, mi0) Error in ll(object) : could not find function "ll" Calls: D3 ... tibble_quos -> eval_tidy -> <Anonymous> -> AIC.default Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 3.18.0
Check: tests
Result: ERROR Running ‘testthat.R’ [55s/93s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(mice) Attaching package: 'mice' The following object is masked from 'package:stats': filter The following objects are masked from 'package:base': cbind, rbind > > test_check("mice") [ FAIL 5 | WARN 0 | SKIP 0 | PASS 373 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-D3.R:23:1'): (code run outside of `test_that()`) ─────────────── Error in `ll(object)`: could not find function "ll" Backtrace: ▆ 1. ├─mice::D3(fit1 = fit1, fit0 = fit0) at test-D3.R:23:1 2. │ ├─lapply(fit1, glance) %>% bind_rows() %>% pull(.data$logLik) 3. │ └─base::lapply(fit1, glance) 4. │ ├─generics (local) FUN(X[[i]], ...) 5. │ └─broom:::glance.lm(X[[i]], ...) 6. │ ├─base::with(...) 7. │ └─base::with.default(...) 8. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 9. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 10. │ └─tibble::tibble(...) 11. │ └─tibble:::tibble_quos(xs, .rows, .name_repair) 12. │ └─rlang::eval_tidy(xs[[j]], mask) 13. ├─dplyr::pull(., .data$logLik) 14. ├─dplyr::bind_rows(.) 15. │ └─rlang::list2(...) 16. ├─stats::AIC(x) 17. └─stats:::AIC.default(x) ── Error ('test-anova.R:9:3'): anova.mira() produces silent D1 and D3 ────────── Error in `ll(object)`: could not find function "ll" Backtrace: ▆ 1. ├─testthat::expect_silent(z1 <- anova(m2, m1, m0)) at test-anova.R:9:3 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. ├─stats::anova(m2, m1, m0) 10. ├─mice:::anova.mira(m2, m1, m0) 11. │ └─lapply(modlist, getfit, 1L) %>% sapply(glance) 12. ├─base::sapply(., glance) 13. │ └─base::lapply(X = X, FUN = FUN, ...) 14. │ ├─generics (local) FUN(X[[i]], ...) 15. │ └─broom:::glance.lm(X[[i]], ...) 16. │ ├─base::with(...) 17. │ └─base::with.default(...) 18. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 19. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 20. │ └─tibble::tibble(...) 21. │ └─tibble:::tibble_quos(xs, .rows, .name_repair) 22. │ └─rlang::eval_tidy(xs[[j]], mask) 23. ├─stats::AIC(x) 24. └─stats:::AIC.default(x) ── Error ('test-anova.R:14:3'): anova.mira() produces silent with D2 ─────────── Error in `ll(object)`: could not find function "ll" Backtrace: ▆ 1. ├─testthat::expect_silent(z2a <- anova(m2, m1, m0, method = "D2")) at test-anova.R:14:3 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. ├─stats::anova(m2, m1, m0, method = "D2") 10. ├─mice:::anova.mira(m2, m1, m0, method = "D2") 11. │ └─lapply(modlist, getfit, 1L) %>% sapply(glance) 12. ├─base::sapply(., glance) 13. │ └─base::lapply(X = X, FUN = FUN, ...) 14. │ ├─generics (local) FUN(X[[i]], ...) 15. │ └─broom:::glance.lm(X[[i]], ...) 16. │ ├─base::with(...) 17. │ └─base::with.default(...) 18. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 19. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 20. │ └─tibble::tibble(...) 21. │ └─tibble:::tibble_quos(xs, .rows, .name_repair) 22. │ └─rlang::eval_tidy(xs[[j]], mask) 23. ├─stats::AIC(x) 24. └─stats:::AIC.default(x) ── Error ('test-pool.r.squared.R:9:3'): pool.r.squared mira ──────────────────── Error in `ll(object)`: could not find function "ll" Backtrace: ▆ 1. ├─base::as.vector(...) at test-pool.r.squared.R:9:3 2. ├─mice::pool.r.squared(fit_mira, adjusted = FALSE) 3. │ ├─base::summary(object, type = "glance") 4. │ └─mice:::summary.mira(object, type = "glance") 5. │ ├─lapply(fitlist, glance, ...) %>% bind_rows() 6. │ └─base::lapply(fitlist, glance, ...) 7. │ ├─generics (local) FUN(X[[i]], ...) 8. │ └─broom:::glance.lm(X[[i]], ...) 9. │ ├─base::with(...) 10. │ └─base::with.default(...) 11. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 12. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 13. │ └─tibble::tibble(...) 14. │ └─tibble:::tibble_quos(xs, .rows, .name_repair) 15. │ └─rlang::eval_tidy(xs[[j]], mask) 16. ├─dplyr::bind_rows(.) 17. │ └─rlang::list2(...) 18. ├─stats::AIC(x) 19. └─stats:::AIC.default(x) ── Error ('test-pool.r.squared.R:14:3'): r.squared mipo ──────────────────────── Error in `if (nrow(object$glanced) < 2) { stop("At least two imputations are needed for pooling.\n") }`: argument is of length zero Backtrace: ▆ 1. ├─base::as.vector(...) at test-pool.r.squared.R:14:3 2. └─mice::pool.r.squared(fit_mipo, adjusted = FALSE) [ FAIL 5 | WARN 0 | SKIP 0 | PASS 373 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 3.18.0
Check: examples
Result: ERROR Running examples in 'mice-Ex.R' failed The error most likely occurred in: > ### Name: D3 > ### Title: Compare two nested models using D3-statistic > ### Aliases: D3 > > ### ** Examples > > # Compare two linear models: > imp <- mice(nhanes2, seed = 51009, print = FALSE) > mi1 <- with(data = imp, expr = lm(bmi ~ age + hyp + chl)) > mi0 <- with(data = imp, expr = lm(bmi ~ age + hyp)) > D3(mi1, mi0) Error in ll(object) : could not find function "ll" Calls: D3 ... tibble_quos -> eval_tidy -> <Anonymous> -> AIC.default Execution halted Flavor: r-devel-windows-x86_64

Version: 3.18.0
Check: tests
Result: ERROR Running 'testthat.R' [67s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(mice) Attaching package: 'mice' The following object is masked from 'package:stats': filter The following objects are masked from 'package:base': cbind, rbind > > test_check("mice") [ FAIL 5 | WARN 0 | SKIP 0 | PASS 373 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-D3.R:23:1'): (code run outside of `test_that()`) ─────────────── Error in `ll(object)`: could not find function "ll" Backtrace: ▆ 1. ├─mice::D3(fit1 = fit1, fit0 = fit0) at test-D3.R:23:1 2. │ ├─lapply(fit1, glance) %>% bind_rows() %>% pull(.data$logLik) 3. │ └─base::lapply(fit1, glance) 4. │ ├─generics (local) FUN(X[[i]], ...) 5. │ └─broom:::glance.lm(X[[i]], ...) 6. │ ├─base::with(...) 7. │ └─base::with.default(...) 8. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 9. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 10. │ └─tibble::tibble(...) 11. │ └─tibble:::tibble_quos(xs, .rows, .name_repair) 12. │ └─rlang::eval_tidy(xs[[j]], mask) 13. ├─dplyr::pull(., .data$logLik) 14. ├─dplyr::bind_rows(.) 15. │ └─rlang::list2(...) 16. ├─stats::AIC(x) 17. └─stats:::AIC.default(x) ── Error ('test-anova.R:9:3'): anova.mira() produces silent D1 and D3 ────────── Error in `ll(object)`: could not find function "ll" Backtrace: ▆ 1. ├─testthat::expect_silent(z1 <- anova(m2, m1, m0)) at test-anova.R:9:3 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. ├─stats::anova(m2, m1, m0) 10. ├─mice:::anova.mira(m2, m1, m0) 11. │ └─lapply(modlist, getfit, 1L) %>% sapply(glance) 12. ├─base::sapply(., glance) 13. │ └─base::lapply(X = X, FUN = FUN, ...) 14. │ ├─generics (local) FUN(X[[i]], ...) 15. │ └─broom:::glance.lm(X[[i]], ...) 16. │ ├─base::with(...) 17. │ └─base::with.default(...) 18. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 19. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 20. │ └─tibble::tibble(...) 21. │ └─tibble:::tibble_quos(xs, .rows, .name_repair) 22. │ └─rlang::eval_tidy(xs[[j]], mask) 23. ├─stats::AIC(x) 24. └─stats:::AIC.default(x) ── Error ('test-anova.R:14:3'): anova.mira() produces silent with D2 ─────────── Error in `ll(object)`: could not find function "ll" Backtrace: ▆ 1. ├─testthat::expect_silent(z2a <- anova(m2, m1, m0, method = "D2")) at test-anova.R:14:3 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. ├─stats::anova(m2, m1, m0, method = "D2") 10. ├─mice:::anova.mira(m2, m1, m0, method = "D2") 11. │ └─lapply(modlist, getfit, 1L) %>% sapply(glance) 12. ├─base::sapply(., glance) 13. │ └─base::lapply(X = X, FUN = FUN, ...) 14. │ ├─generics (local) FUN(X[[i]], ...) 15. │ └─broom:::glance.lm(X[[i]], ...) 16. │ ├─base::with(...) 17. │ └─base::with.default(...) 18. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 19. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 20. │ └─tibble::tibble(...) 21. │ └─tibble:::tibble_quos(xs, .rows, .name_repair) 22. │ └─rlang::eval_tidy(xs[[j]], mask) 23. ├─stats::AIC(x) 24. └─stats:::AIC.default(x) ── Error ('test-pool.r.squared.R:9:3'): pool.r.squared mira ──────────────────── Error in `ll(object)`: could not find function "ll" Backtrace: ▆ 1. ├─base::as.vector(...) at test-pool.r.squared.R:9:3 2. ├─mice::pool.r.squared(fit_mira, adjusted = FALSE) 3. │ ├─base::summary(object, type = "glance") 4. │ └─mice:::summary.mira(object, type = "glance") 5. │ ├─lapply(fitlist, glance, ...) %>% bind_rows() 6. │ └─base::lapply(fitlist, glance, ...) 7. │ ├─generics (local) FUN(X[[i]], ...) 8. │ └─broom:::glance.lm(X[[i]], ...) 9. │ ├─base::with(...) 10. │ └─base::with.default(...) 11. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 12. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 13. │ └─tibble::tibble(...) 14. │ └─tibble:::tibble_quos(xs, .rows, .name_repair) 15. │ └─rlang::eval_tidy(xs[[j]], mask) 16. ├─dplyr::bind_rows(.) 17. │ └─rlang::list2(...) 18. ├─stats::AIC(x) 19. └─stats:::AIC.default(x) ── Error ('test-pool.r.squared.R:14:3'): r.squared mipo ──────────────────────── Error in `if (nrow(object$glanced) < 2) { stop("At least two imputations are needed for pooling.\n") }`: argument is of length zero Backtrace: ▆ 1. ├─base::as.vector(...) at test-pool.r.squared.R:14:3 2. └─mice::pool.r.squared(fit_mipo, adjusted = FALSE) [ FAIL 5 | WARN 0 | SKIP 0 | PASS 373 ] Error: Test failures Execution halted Flavor: r-devel-windows-x86_64