Last updated on 2025-09-07 09:49:17 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 14.62 | 328.27 | 342.89 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 8.75 | 244.68 | 253.43 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 582.36 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 545.50 | OK | |||
| r-devel-windows-x86_64 | 1.0.0 | 16.00 | 357.00 | 373.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.0 | 13.43 | 348.57 | 362.00 | OK | |
| r-release-linux-x86_64 | 1.0.0 | 12.97 | 345.33 | 358.30 | OK | |
| r-release-macos-arm64 | 1.0.0 | 180.00 | OK | |||
| r-release-macos-x86_64 | 1.0.0 | 337.00 | OK | |||
| r-release-windows-x86_64 | 1.0.0 | 15.00 | 366.00 | 381.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | 178.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.0 | 309.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 21.00 | 460.00 | 481.00 | OK |
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [90s/128s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mixpoissonreg)
>
> test_check("mixpoissonreg")
Negative Binomial Regression - Expectation-Maximization Algorithm
Call:
mixpoissonreg(formula = daysabs ~ prog + math, data = Attendance,
em_controls = list(maxit = 1))
Coefficients modeling the mean (with log link):
(Intercept) progAcademic progVocational math
2.615321329 -0.440755734 -1.278742703 -0.005993368
Coefficients modeling the precision (with identity link):
(Intercept)
1.032717
Negative Binomial Regression - Maximum-Likelihood Estimation
Call:
mixpoissonregML(formula = daysabs ~ prog + math, data = Attendance)
Coefficients modeling the mean (with log link):
(Intercept) progAcademic progVocational math
2.615321329 -0.440755734 -1.278742703 -0.005993368
Coefficients modeling the precision (with identity link):
(Intercept)
1.032717
Negative Binomial Regression - Maximum-Likelihood Estimation
Call:
mixpoissonregML(formula = daysabs ~ prog + math, data = Attendance)
Pearson residuals:
RSS Min 1Q Median 3Q Max
339.8789 -0.9611 -0.7098 -0.3259 0.2460 4.9565
Coefficients modeling the mean (with link):
Estimate Std.error z-value Pr(>|z|)
(Intercept) 2.615321 0.196355 13.319 < 2e-16 ***
progAcademic -0.440756 0.182579 -2.414 0.0158 *
progVocational -1.278743 0.201982 -6.331 2.44e-10 ***
math -0.005993 0.002507 -2.390 0.0168 *
Coefficients modeling the precision (with link):
Estimate Std.error z-value Pr(>|z|)
(Intercept) 1.0327 0.1062 9.729 <2e-16 ***
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Efron's pseudo R-squared: 0.1707781
Number of function calls by 'optim' = 4
Negative Binomial Regression - Maximum-Likelihood Estimation
Call:
mixpoissonregML(formula = daysabs ~ prog + math, data = Attendance,
envelope = 10, optim_controls = list(maxit = 1))
Pearson residuals:
RSS Min 1Q Median 3Q Max
339.8789 -0.9611 -0.7098 -0.3259 0.2460 4.9565
Coefficients modeling the mean (with link):
Estimate Std.error z-value Pr(>|z|)
(Intercept) 2.615321 0.196355 13.319 < 2e-16 ***
progAcademic -0.440756 0.182579 -2.414 0.0158 *
progVocational -1.278743 0.201982 -6.331 2.44e-10 ***
math -0.005993 0.002507 -2.390 0.0168 *
Coefficients modeling the precision (with link):
Estimate Std.error z-value Pr(>|z|)
(Intercept) 1.0327 0.1062 9.729 <2e-16 ***
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Efron's pseudo R-squared: 0.1707781
Percentage of residuals within the envelope = 79.2994
Number of function calls by 'optim' = 4
[ FAIL 1 | WARN 25 | SKIP 0 | PASS 41 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-tidy.R:14:1'): (code run outside of `test_that()`) ─────────────
Error in `ll(object)`: could not find function "ll"
Backtrace:
▆
1. ├─generics::glance(fit1) at test-tidy.R:14:1
2. ├─mixpoissonreg:::glance.mixpoissonreg(fit1)
3. │ └─tibble::tibble(...)
4. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
5. │ └─rlang::eval_tidy(xs[[j]], mask)
6. ├─stats::AIC(x)
7. └─stats:::AIC.default(x)
[ FAIL 1 | WARN 25 | SKIP 0 | PASS 41 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘influence-mixpoissonreg.Rmd’ using rmarkdown
--- finished re-building ‘influence-mixpoissonreg.Rmd’
--- re-building ‘intervals-mixpoissonreg.Rmd’ using rmarkdown
--- finished re-building ‘intervals-mixpoissonreg.Rmd’
--- re-building ‘ml-mixpoissonreg.Rmd’ using rmarkdown
--- finished re-building ‘ml-mixpoissonreg.Rmd’
--- re-building ‘tidyverse-mixpoissonreg.Rmd’ using rmarkdown
Quitting from tidyverse-mixpoissonreg.Rmd:142-144 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `ll()`:
! could not find function "ll"
---
Backtrace:
▆
1. ├─generics::glance(fit)
2. ├─mixpoissonreg:::glance.mixpoissonreg(fit)
3. │ └─tibble::tibble(...)
4. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
5. │ └─rlang::eval_tidy(xs[[j]], mask)
6. ├─stats::AIC(x)
7. └─stats:::AIC.default(x)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'tidyverse-mixpoissonreg.Rmd' failed with diagnostics:
could not find function "ll"
--- failed re-building ‘tidyverse-mixpoissonreg.Rmd’
--- re-building ‘tutorial-mixpoissonreg.Rmd’ using rmarkdown
--- finished re-building ‘tutorial-mixpoissonreg.Rmd’
SUMMARY: processing the following file failed:
‘tidyverse-mixpoissonreg.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.0
Check: tests
Result: ERROR
Running 'testthat.R' [120s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(mixpoissonreg)
>
> test_check("mixpoissonreg")
Negative Binomial Regression - Expectation-Maximization Algorithm
Call:
mixpoissonreg(formula = daysabs ~ prog + math, data = Attendance,
em_controls = list(maxit = 1))
Coefficients modeling the mean (with log link):
(Intercept) progAcademic progVocational math
2.615321329 -0.440755734 -1.278742703 -0.005993368
Coefficients modeling the precision (with identity link):
(Intercept)
1.032717
Negative Binomial Regression - Maximum-Likelihood Estimation
Call:
mixpoissonregML(formula = daysabs ~ prog + math, data = Attendance)
Coefficients modeling the mean (with log link):
(Intercept) progAcademic progVocational math
2.615321329 -0.440755734 -1.278742703 -0.005993368
Coefficients modeling the precision (with identity link):
(Intercept)
1.032717
Negative Binomial Regression - Maximum-Likelihood Estimation
Call:
mixpoissonregML(formula = daysabs ~ prog + math, data = Attendance)
Pearson residuals:
RSS Min 1Q Median 3Q Max
339.8789 -0.9611 -0.7098 -0.3259 0.2460 4.9565
Coefficients modeling the mean (with link):
Estimate Std.error z-value Pr(>|z|)
(Intercept) 2.615321 0.196355 13.319 < 2e-16 ***
progAcademic -0.440756 0.182579 -2.414 0.0158 *
progVocational -1.278743 0.201982 -6.331 2.44e-10 ***
math -0.005993 0.002507 -2.390 0.0168 *
Coefficients modeling the precision (with link):
Estimate Std.error z-value Pr(>|z|)
(Intercept) 1.0327 0.1062 9.729 <2e-16 ***
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Efron's pseudo R-squared: 0.1707781
Number of function calls by 'optim' = 4
Negative Binomial Regression - Maximum-Likelihood Estimation
Call:
mixpoissonregML(formula = daysabs ~ prog + math, data = Attendance,
envelope = 10, optim_controls = list(maxit = 1))
Pearson residuals:
RSS Min 1Q Median 3Q Max
339.8789 -0.9611 -0.7098 -0.3259 0.2460 4.9565
Coefficients modeling the mean (with link):
Estimate Std.error z-value Pr(>|z|)
(Intercept) 2.615321 0.196355 13.319 < 2e-16 ***
progAcademic -0.440756 0.182579 -2.414 0.0158 *
progVocational -1.278743 0.201982 -6.331 2.44e-10 ***
math -0.005993 0.002507 -2.390 0.0168 *
Coefficients modeling the precision (with link):
Estimate Std.error z-value Pr(>|z|)
(Intercept) 1.0327 0.1062 9.729 <2e-16 ***
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Efron's pseudo R-squared: 0.1707781
Percentage of residuals within the envelope = 79.2994
Number of function calls by 'optim' = 4
[ FAIL 1 | WARN 26 | SKIP 0 | PASS 41 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-tidy.R:14:1'): (code run outside of `test_that()`) ─────────────
Error in `ll(object)`: could not find function "ll"
Backtrace:
▆
1. ├─generics::glance(fit1) at test-tidy.R:14:1
2. ├─mixpoissonreg:::glance.mixpoissonreg(fit1)
3. │ └─tibble::tibble(...)
4. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
5. │ └─rlang::eval_tidy(xs[[j]], mask)
6. ├─stats::AIC(x)
7. └─stats:::AIC.default(x)
[ FAIL 1 | WARN 26 | SKIP 0 | PASS 41 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'influence-mixpoissonreg.Rmd' using rmarkdown
--- finished re-building 'influence-mixpoissonreg.Rmd'
--- re-building 'intervals-mixpoissonreg.Rmd' using rmarkdown
--- finished re-building 'intervals-mixpoissonreg.Rmd'
--- re-building 'ml-mixpoissonreg.Rmd' using rmarkdown
--- finished re-building 'ml-mixpoissonreg.Rmd'
--- re-building 'tidyverse-mixpoissonreg.Rmd' using rmarkdown
Quitting from tidyverse-mixpoissonreg.Rmd:142-144 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `ll()`:
! could not find function "ll"
---
Backtrace:
▆
1. ├─generics::glance(fit)
2. ├─mixpoissonreg:::glance.mixpoissonreg(fit)
3. │ └─tibble::tibble(...)
4. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
5. │ └─rlang::eval_tidy(xs[[j]], mask)
6. ├─stats::AIC(x)
7. └─stats:::AIC.default(x)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'tidyverse-mixpoissonreg.Rmd' failed with diagnostics:
could not find function "ll"
--- failed re-building 'tidyverse-mixpoissonreg.Rmd'
--- re-building 'tutorial-mixpoissonreg.Rmd' using rmarkdown
--- finished re-building 'tutorial-mixpoissonreg.Rmd'
SUMMARY: processing the following file failed:
'tidyverse-mixpoissonreg.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64