Last updated on 2026-01-17 05:50:04 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 37.32 | 807.95 | 845.27 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 21.55 | 533.73 | 555.28 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 71.00 | 1391.17 | 1462.17 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 63.00 | 1359.21 | 1422.21 | ERROR | |
| r-devel-windows-x86_64 | 0.10.0 | 37.00 | 585.00 | 622.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 50.91 | 731.70 | 782.61 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 38.01 | 740.60 | 778.61 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 37.00 | 542.00 | 579.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 121.00 | 129.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 26.00 | 735.00 | 761.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 51.00 | 671.00 | 722.00 | ERROR |
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [14m/16m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2026-01-16 22:05:21.815205: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:21.816333: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:21.880473: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:22.007429: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:22.420367: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:22.421148: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:22.469606: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:22.607865: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:22.779737: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:05:22.79887: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:22.859703: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:23.027447: embedding
> test_pipeop_isomap.R: 2026-01-16 22:05:23.03655: DONE
> test_pipeop_isomap.R: 2026-01-16 22:05:23.203577: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:05:23.212435: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:23.302503: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:23.55887: embedding
> test_pipeop_isomap.R: 2026-01-16 22:05:23.569044: DONE
> test_pipeop_isomap.R: 2026-01-16 22:05:24.260534: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:24.270543: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:24.412566: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:24.947395: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:25.163729: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:05:25.164835: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:25.377753: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:26.60285: embedding
> test_pipeop_isomap.R: 2026-01-16 22:05:26.618121: DONE
> test_pipeop_isomap.R: 2026-01-16 22:05:27.536823: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:27.537541: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:27.583538: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:27.698513: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:27.926834: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:05:27.927844: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:28.021658: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:28.247099: embedding
> test_pipeop_isomap.R: 2026-01-16 22:05:28.257413: DONE
> test_pipeop_isomap.R: 2026-01-16 22:05:29.103546: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:29.104297: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:29.141062: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:29.247646: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:29.573888: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:05:29.579118: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:29.642315: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:29.875218: embedding
> test_pipeop_isomap.R: 2026-01-16 22:05:29.877158: DONE
> test_pipeop_isomap.R: 2026-01-16 22:05:30.432383: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:30.433199: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:30.486057: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:30.59295: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:30.954118: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:05:30.958241: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:31.029858: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:31.236144: embedding
> test_pipeop_isomap.R: 2026-01-16 22:05:31.247053: DONE
> test_pipeop_isomap.R: 2026-01-16 22:05:31.679509: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:31.680192: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:31.715408: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:31.838906: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:32.114463: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:05:32.115437: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:32.185631: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:32.38537: embedding
> test_pipeop_isomap.R: 2026-01-16 22:05:32.393699: DONE
> test_pipeop_isomap.R: 2026-01-16 22:05:32.908178: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:32.908879: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:32.947248: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:33.013079: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:33.363797: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:05:33.364773: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:33.458: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:33.727677: embedding
> test_pipeop_isomap.R: 2026-01-16 22:05:33.72955: DONE
> test_pipeop_isomap.R: 2026-01-16 22:05:34.332661: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:34.333369: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:34.389004: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:34.509156: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:35.174591: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:35.176275: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:35.234699: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:35.329922: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:05:35.485867: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:05:35.486547: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:05:35.52283: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:05:35.61907: Classical Scaling
Saving _problems/test_pipeop_learnercv-127.R
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 1 | WARN 0 | SKIP 100 | PASS 13056 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3',
'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3',
'test_GraphLearner.R:571:3', 'test_Graph.R:283:3', 'test_PipeOp.R:32:1',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_datefeatures.R:10:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_info.R:6:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_pipeop_learnercv.R:124:3'): PipeOpLearnerCV - cv ensemble averages fold learners ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('3 string mismatches')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(as.character(result_response), task$class_names[max.col(manual_prob)]) at test_pipeop_learnercv.R:124:3
2. └─testthat::expect_true(...)
[ FAIL 1 | WARN 0 | SKIP 100 | PASS 13056 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [111s/54s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-17 15:19:57.73459: Isomap START
> test_pipeop_isomap.R: 2026-01-17 15:19:57.734845: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:57.737795: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:57.743865: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 15:19:57.754684: Isomap START
> test_pipeop_isomap.R: 2026-01-17 15:19:57.754826: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:57.756906: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:57.762294: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 15:19:57.767944: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 15:19:57.768069: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:57.77202: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:57.786465: embedding
> test_pipeop_isomap.R: 2026-01-17 15:19:57.786909: DONE
> test_pipeop_isomap.R: 2026-01-17 15:19:57.793598: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 15:19:57.79375: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:57.798375: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:57.813661: embedding
> test_pipeop_isomap.R: 2026-01-17 15:19:57.814079: DONE
> test_pipeop_isomap.R: 2026-01-17 15:19:57.83233: Isomap START
> test_pipeop_isomap.R: 2026-01-17 15:19:57.83244: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:57.836574: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:57.86934: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 15:19:57.877919: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 15:19:57.878085: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:57.891989: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:57.973356: embedding
> test_pipeop_isomap.R: 2026-01-17 15:19:57.974433: DONE
> test_pipeop_isomap.R: 2026-01-17 15:19:58.005998: Isomap START
> test_pipeop_isomap.R: 2026-01-17 15:19:58.006154: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:58.008484: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:58.014634: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 15:19:58.022458: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 15:19:58.022635: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:58.026987: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:58.042027: embedding
> test_pipeop_isomap.R: 2026-01-17 15:19:58.042471: DONE
> test_pipeop_isomap.R: 2026-01-17 15:19:58.076337: Isomap START
> test_pipeop_isomap.R: 2026-01-17 15:19:58.076493: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:58.078886: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:58.085175: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 15:19:58.096374: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 15:19:58.096626: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:58.106317: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:58.121135: embedding
> test_pipeop_isomap.R: 2026-01-17 15:19:58.121461: DONE
> test_pipeop_isomap.R: 2026-01-17 15:19:58.138674: Isomap START
> test_pipeop_isomap.R: 2026-01-17 15:19:58.138794: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:58.141173: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:58.147361: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 15:19:58.1584: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 15:19:58.158571: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:58.162836: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:58.177925: embedding
> test_pipeop_isomap.R: 2026-01-17 15:19:58.178307: DONE
> test_pipeop_isomap.R: 2026-01-17 15:19:58.195726: Isomap START
> test_pipeop_isomap.R: 2026-01-17 15:19:58.195841: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:58.19809: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:58.204118: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 15:19:58.215893: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 15:19:58.216125: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:58.220716: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:58.235816: embedding
> test_pipeop_isomap.R: 2026-01-17 15:19:58.236208: DONE
> test_pipeop_isomap.R: 2026-01-17 15:19:58.450103: Isomap START
> test_pipeop_isomap.R: 2026-01-17 15:19:58.450274: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:58.45243: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:58.458577: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 15:19:58.470536: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 15:19:58.470711: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:58.475216: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:58.489669: embedding
> test_pipeop_isomap.R: 2026-01-17 15:19:58.490148: DONE
> test_pipeop_isomap.R: 2026-01-17 15:19:58.512068: Isomap START
> test_pipeop_isomap.R: 2026-01-17 15:19:58.512202: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:58.514552: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:58.520645: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 15:19:58.541781: Isomap START
> test_pipeop_isomap.R: 2026-01-17 15:19:58.541912: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:58.544412: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:58.550584: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 15:19:58.55618: Isomap START
> test_pipeop_isomap.R: 2026-01-17 15:19:58.556284: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 15:19:58.55854: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 15:19:58.564577: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [323s/435s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-16 22:38:39.696858: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:38:39.69739: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:39.725889: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:39.753632: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:38:39.925164: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:38:39.92547: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:39.933361: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:39.97883: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:38:40.03968: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:38:40.040113: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:40.090427: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:40.213914: embedding
> test_pipeop_isomap.R: 2026-01-16 22:38:40.215023: DONE
> test_pipeop_isomap.R: 2026-01-16 22:38:40.267632: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:38:40.26795: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:40.314152: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:40.412238: embedding
> test_pipeop_isomap.R: 2026-01-16 22:38:40.430364: DONE
> test_pipeop_isomap.R: 2026-01-16 22:38:40.603101: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:38:40.603393: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:40.69219: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:41.018791: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:38:41.075729: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:38:41.076154: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:41.156861: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:41.628708: embedding
> test_pipeop_isomap.R: 2026-01-16 22:38:41.643742: DONE
> test_pipeop_isomap.R: 2026-01-16 22:38:41.901493: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:38:41.901796: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:41.925009: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:41.972656: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:38:42.024996: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:38:42.025424: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:42.056302: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:42.197128: embedding
> test_pipeop_isomap.R: 2026-01-16 22:38:42.199714: DONE
> test_pipeop_isomap.R: 2026-01-16 22:38:42.499938: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:38:42.500255: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:42.51901: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:42.550038: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:38:42.659102: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:38:42.660228: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:42.67527: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:42.78983: embedding
> test_pipeop_isomap.R: 2026-01-16 22:38:42.825153: DONE
> test_pipeop_isomap.R: 2026-01-16 22:38:42.990866: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:38:42.991157: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:43.009671: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:43.048297: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:38:43.111621: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:38:43.11207: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:43.173995: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:43.295708: embedding
> test_pipeop_isomap.R: 2026-01-16 22:38:43.296876: DONE
> test_pipeop_isomap.R: 2026-01-16 22:38:43.429675: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:38:43.42998: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:43.436567: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:43.500949: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:38:43.593359: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:38:43.593777: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:43.613145: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:43.747306: embedding
> test_pipeop_isomap.R: 2026-01-16 22:38:43.748521: DONE
> test_pipeop_isomap.R: 2026-01-16 22:38:43.897166: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:38:43.897496: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:43.923333: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:43.956907: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:38:44.074507: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 22:38:44.075087: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:44.107694: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:44.211025: embedding
> test_pipeop_isomap.R: 2026-01-16 22:38:44.21218: DONE
> test_pipeop_isomap.R: 2026-01-16 22:38:44.383348: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:38:44.38366: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:44.423629: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:44.454409: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:38:44.664593: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:38:44.664899: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:44.684584: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:44.718951: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 22:38:44.761504: Isomap START
> test_pipeop_isomap.R: 2026-01-16 22:38:44.761808: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 22:38:44.785608: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 22:38:44.814314: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [290s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-16 16:16:45.815526: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:45.816596: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:45.830182: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:45.85286: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:45.924012: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:45.924484: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:45.932784: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:45.954529: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:45.98782: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:45.988521: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.012046: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.061949: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:46.063834: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:46.115601: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:46.116369: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.141883: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.192334: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:46.194562: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:46.309377: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:46.31006: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.334583: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.447183: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:46.491673: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:46.492318: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.534133: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.734709: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:46.739824: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:46.956391: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:46.956832: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.963703: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.979221: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:47.01364: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.01425: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.029205: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.065929: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:47.06718: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:47.259106: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.25977: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.270811: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.293168: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:47.3869: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.38753: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.402279: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.437225: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:47.43836: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:47.541812: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.542424: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.554538: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.577187: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:47.654275: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.655185: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.679313: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.729601: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:47.731512: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:47.830133: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.830653: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.841836: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.86317: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:47.935614: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.936472: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.958377: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.998494: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:48.000015: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:48.124603: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.125084: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.134392: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.149473: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:48.212644: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.213604: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.23658: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.285648: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:48.287417: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:48.423782: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.424429: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.436787: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.458976: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:48.576937: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.577575: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.588312: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.60597: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:48.644312: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.645016: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.656383: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.679226: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64