Package: pourrna
Version: 1.3.1-1
Architecture: amd64
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Installed-Size: 2086
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), viennarna-dev (>= 2.4.11)
Conflicts: pourrna
Provides: pourrna
Filename: amd64/pourrna_1.3.1-1_amd64.deb
Size: 356000
MD5sum: cbfccec4fcb100e303f2135409e91327
SHA1: 051203076db963f564f7da39da4fe90cfb7ad489
SHA256: afb1e53d65c79e1102505c3139c968d07cb357b9b181e2dbab02ff8a42856169
Section: science
Priority: optional
Description: Compute local minima and respective transition rates of an RNA energy landscape.
 pourRNA takes an RNA sequence as input and explores the landscape topology
 locally. This means the flooding algorithm will be applied for each gradient
 basin. The partition function for the basin and also for the transitions to
 neighbored minima will be calculated during the flooding.
 In order to speed up the computation of the rate matrix, local filtering
 techniques can be applied. These filters prune non-relevant transitions
 directly after flooding a gradient basin. As a result, the transition rates
 for the filtered landscape topology can be calculated faster than with global
 approaches. The advantage increases with increasing size of the energy
 landscape.

Package: pourrna-dbgsym
Source: pourrna
Version: 1.3.1-1
Auto-Built-Package: debug-symbols
Architecture: amd64
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Installed-Size: 3388
Depends: pourrna (= 1.3.1-1)
Filename: amd64/pourrna-dbgsym_1.3.1-1_amd64.deb
Size: 3129804
MD5sum: 93a3d849047d5bf9a7f3ea560d698fd4
SHA1: 205928aeeadf634a7ad6ba8b246afe9b721730af
SHA256: 8d6537283f99c8de7ce4ef58ee835d4e19089c31929741408cb89a1c264a1adb
Section: debug
Priority: optional
Description: debug symbols for pourrna
Build-Ids: 1135626879a0078b066dd22c673a93a73b89bc6c

Package: python3-rnaxplorer
Source: rnaxplorer
Version: 0.9.0
Architecture: amd64
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Installed-Size: 8
Depends: python3
Conflicts: python3-rnaxplorer
Filename: amd64/python3-rnaxplorer_0.9.0_amd64.deb
Size: 1764
MD5sum: 740bdeba68d4612092868e427082a638
SHA1: 84518269fef4bc69a248dcb9b04153f249d363aa
SHA256: eca7a8fe7a829dd2554b6180d0a7bd7753d4c3f8a002f7e47af9ad64a34c189c
Section: python
Priority: optional
Description: Python 3 bindings to RNAxplorerlib
 The RNAxplorer class to access RNAxplorerlib C-library functions from
 within Python 3 scripts

Package: rnaxplorer
Version: 0.9.0
Architecture: amd64
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Installed-Size: 8
Depends: viennarna-dev (>= 2.4.14)
Recommends: python-rnaxplorer
Conflicts: rnaxplorer
Provides: rnaxplorer
Filename: amd64/rnaxplorer_0.9.0_amd64.deb
Size: 1880
MD5sum: 81173326b4aaa3240f50afb1b07c60cd
SHA1: 06d028bd4a3e6cda4a84c95be024e40d43d280be
SHA256: 38ec03af1f11327565f9bfc228f6632e0cd38ba21fbad2f0c57a4120287fce22
Section: science
Priority: optional
Description: Sample RNA secondary structures and explore the RNA energy landscape.
 RNAxplorer takes an RNA sequence as input and samples secondary structures that
 represent the most important structures of the RNA conformation space and thus
 are well suited to compute RNA folding kinetics.