Package: pourrna
Version: 1.3.1-1
Architecture: amd64
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Installed-Size: 2055
Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 13.1), viennarna-dev (>= 2.4.11)
Conflicts: pourrna
Provides: pourrna
Filename: amd64/pourrna_1.3.1-1_amd64.deb
Size: 380786
MD5sum: b366e1a84c1eb4acdbcaadd8be396669
SHA1: b2ad8578873b8b479a0b05c4ba3c05851144b701
SHA256: adb39f31946a2550a3a401d635f032dc31547ef5c718748069c0b867e431d177
Section: science
Priority: optional
Description: Compute local minima and respective transition rates of an RNA energy landscape.
 pourRNA takes an RNA sequence as input and explores the landscape topology
 locally. This means the flooding algorithm will be applied for each gradient
 basin. The partition function for the basin and also for the transitions to
 neighbored minima will be calculated during the flooding.
 In order to speed up the computation of the rate matrix, local filtering
 techniques can be applied. These filters prune non-relevant transitions
 directly after flooding a gradient basin. As a result, the transition rates
 for the filtered landscape topology can be calculated faster than with global
 approaches. The advantage increases with increasing size of the energy
 landscape.

Package: python3-rnaxplorer
Source: rnaxplorer
Version: 0.9.0
Architecture: amd64
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Installed-Size: 8
Depends: python3
Conflicts: python3-rnaxplorer
Filename: amd64/python3-rnaxplorer_0.9.0_amd64.deb
Size: 1606
MD5sum: 5bb1497561e35c776a61b569284767ad
SHA1: acaff701c5b76861862ce9eb06239996fb6a63dd
SHA256: b64ad5c30fce34da28a0b983338cf2cda69e74eb951109b8832303139161bb77
Section: python
Priority: optional
Description: Python 3 bindings to RNAxplorerlib
 The RNAxplorer class to access RNAxplorerlib C-library functions from
 within Python 3 scripts

Package: rnaxplorer
Version: 0.9.0
Architecture: amd64
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Installed-Size: 8
Depends: viennarna-dev (>= 2.4.14)
Recommends: python-rnaxplorer
Conflicts: rnaxplorer
Provides: rnaxplorer
Filename: amd64/rnaxplorer_0.9.0_amd64.deb
Size: 1714
MD5sum: 224dcca9298c3b2f4bb4b49885c4a872
SHA1: 97a133dffe625422bdae02ba62ea78d0c2f6c192
SHA256: 9a9edf0927d0befbbf107eb54e43e1a84b6675b4839afe2b224a0d50fbe4437c
Section: science
Priority: optional
Description: Sample RNA secondary structures and explore the RNA energy landscape.
 RNAxplorer takes an RNA sequence as input and samples secondary structures that
 represent the most important structures of the RNA conformation space and thus
 are well suited to compute RNA folding kinetics.