Package: pourrna
Version: 1.3.1-1
Architecture: amd64
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Installed-Size: 2211
Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 13.1), viennarna-dev (>= 2.4.11)
Conflicts: pourrna
Provides: pourrna
Filename: amd64/pourrna_1.3.1-1_amd64.deb
Size: 440820
MD5sum: eca837137c39fc90eb33e707cac8bbb3
SHA1: d09913f066886d98ade33d6c894f7b65a52c8de6
SHA256: f8134b4758695b8b8f8f69a48ff5d245279ae0ca62dae7bdfb19312762e14de5
Section: science
Priority: optional
Description: Compute local minima and respective transition rates of an RNA energy landscape.
 pourRNA takes an RNA sequence as input and explores the landscape topology
 locally. This means the flooding algorithm will be applied for each gradient
 basin. The partition function for the basin and also for the transitions to
 neighbored minima will be calculated during the flooding.
 In order to speed up the computation of the rate matrix, local filtering
 techniques can be applied. These filters prune non-relevant transitions
 directly after flooding a gradient basin. As a result, the transition rates
 for the filtered landscape topology can be calculated faster than with global
 approaches. The advantage increases with increasing size of the energy
 landscape.

Package: python3-rnaxplorer
Source: rnaxplorer
Version: 0.9.0
Architecture: amd64
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Installed-Size: 8
Depends: python3
Conflicts: python3-rnaxplorer
Filename: amd64/python3-rnaxplorer_0.9.0_amd64.deb
Size: 1606
MD5sum: 5bb1497561e35c776a61b569284767ad
SHA1: acaff701c5b76861862ce9eb06239996fb6a63dd
SHA256: b64ad5c30fce34da28a0b983338cf2cda69e74eb951109b8832303139161bb77
Section: python
Priority: optional
Description: Python 3 bindings to RNAxplorerlib
 The RNAxplorer class to access RNAxplorerlib C-library functions from
 within Python 3 scripts

Package: rnaxplorer
Version: 0.9.0
Architecture: amd64
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Installed-Size: 8
Depends: viennarna-dev (>= 2.4.14)
Recommends: python-rnaxplorer
Conflicts: rnaxplorer
Provides: rnaxplorer
Filename: amd64/rnaxplorer_0.9.0_amd64.deb
Size: 1714
MD5sum: 224dcca9298c3b2f4bb4b49885c4a872
SHA1: 97a133dffe625422bdae02ba62ea78d0c2f6c192
SHA256: 9a9edf0927d0befbbf107eb54e43e1a84b6675b4839afe2b224a0d50fbe4437c
Section: science
Priority: optional
Description: Sample RNA secondary structures and explore the RNA energy landscape.
 RNAxplorer takes an RNA sequence as input and samples secondary structures that
 represent the most important structures of the RNA conformation space and thus
 are well suited to compute RNA folding kinetics.