CRAN Package Check Results for Maintainer ‘Jake Hughey <jakejhughey at gmail.com>’

Last updated on 2024-05-04 09:50:10 CEST.

Package	ERROR	NOTE	OK
deltaccd			12
limorhyde	4		8
limorhyde2	1		12
phers			12
pmparser			12
seeker	1	3	9
simphony			12
spectr			12
tipa			12

Package deltaccd

Current CRAN status: OK: 12

Package limorhyde

Current CRAN status: ERROR: 4, OK: 8

Version: 1.0.1
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'annotate', 'org.Mm.eg.db' Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘introduction.Rmd’ using rmarkdown Quitting from lines at lines 22-30 [unnamed-chunk-2] (introduction.Rmd) Error: processing vignette 'introduction.Rmd' failed with diagnostics: there is no package called 'annotate' --- failed re-building ‘introduction.Rmd’ SUMMARY: processing the following file failed: ‘introduction.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.1
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘org.Mm.eg.db’ Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘introduction.Rmd’ using rmarkdown Quitting from lines 22-30 [unnamed-chunk-2] (introduction.Rmd) Error: processing vignette 'introduction.Rmd' failed with diagnostics: there is no package called 'org.Mm.eg.db' --- failed re-building ‘introduction.Rmd’ SUMMARY: processing the following file failed: ‘introduction.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-arm64

Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘introduction.Rmd’ using rmarkdown Quitting from lines 22-30 (introduction.Rmd) Error: processing vignette 'introduction.Rmd' failed with diagnostics: there is no package called 'org.Mm.eg.db' --- failed re-building ‘introduction.Rmd’ SUMMARY: processing the following file failed: ‘introduction.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-macos-arm64

Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘introduction.Rmd’ using rmarkdown Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. Quitting from lines 22-30 (introduction.Rmd) Error: processing vignette 'introduction.Rmd' failed with diagnostics: there is no package called 'org.Mm.eg.db' --- failed re-building ‘introduction.Rmd’ SUMMARY: processing the following file failed: ‘introduction.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-macos-x86_64

Package limorhyde2

Current CRAN status: ERROR: 1, OK: 12

Version: 0.1.0
Check: package dependencies
Result: ERROR Package required but not available: ‘DESeq2’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-debian-clang

Package phers

Current CRAN status: OK: 12

Package pmparser

Current CRAN status: OK: 12

Package seeker

Current CRAN status: ERROR: 1, NOTE: 3, OK: 9

Additional issues

noSuggests

Version: 1.1.5
Check: package dependencies
Result: ERROR Packages required but not available: 'AnnotationDbi', 'biomaRt' Packages suggested but not available for checking: 'ArrayExpress', 'org.Mm.eg.db' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.1.5
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘org.Mm.eg.db’ Flavor: r-release-macos-arm64

Version: 1.1.5
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘ArrayExpress’ Flavor: r-oldrel-macos-arm64

Version: 1.1.5
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘ArrayExpress’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.1.5
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'ArrayExpress', 'org.Mm.eg.db' Flavor: r-oldrel-macos-x86_64

Package simphony

Current CRAN status: OK: 12

Package spectr

Current CRAN status: OK: 12

Package tipa

Current CRAN status: OK: 12