ProcessImportPds.cpp

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#include "ProcessImportPds.h"

#include <QString>

#include <iostream>
#include <QString>
#include <sstream>

#include "IException.h"
#include "ImportPdsTable.h"
#include "IString.h"
#include "LineManager.h"
#include "OriginalLabel.h"
#include "PixelType.h"
#include "Preference.h"
#include "Projection.h"
#include "TProjection.h"
#include "Pvl.h"
#include "PvlObject.h"
#include "PvlTokenizer.h"
#include "PvlTranslationManager.h"
#include "SpecialPixel.h"
#include "Table.h"
#include "UserInterface.h"

using namespace std;
namespace Isis {

  ProcessImportPds::ProcessImportPds() {
    p_keepOriginalLabel = true;
    p_encodingType = NONE;
    p_jp2File.clear();

    // Set up a translater for PDS file of type IMAGE
    Isis::PvlGroup &dataDir = Isis::Preference::Preferences().findGroup("DataDirectory");
    p_transDir = (QString) dataDir["Base"];
  }


  ProcessImportPds::~ProcessImportPds() {
  }


  void ProcessImportPds::SetPdsFile(const Isis::Pvl &pdsLabelPvl,
                                    const QString &pdsDataFile,
                                    PdsFileType allowedTypes) {

    // Save the label and file for future use
    p_pdsLabel = pdsLabelPvl;
    p_labelFile = pdsDataFile;
    ProcessLabel(pdsDataFile, allowedTypes);
  }


  void ProcessImportPds::SetPdsFile(const QString &pdsLabelFile,
                                    const QString &pdsDataFile,
                                    Isis::Pvl &pdsLabel,
                                    PdsFileType allowedTypes) {

    // Internalize the PDS label in the PVL that was passed in
    try {
      pdsLabel.read(pdsLabelFile);
    }
    catch (IException &e) {
      throw IException(e, IException::User,
                       QObject::tr("This image does not contain a pds label.  You will need an "
                                   "image with a PDS label or a detached PDS label for this "
                                   "image."), _FILEINFO_);
    }

    // Save the label and file for future use
    p_pdsLabel = pdsLabel;
    p_labelFile = pdsLabelFile;
    ProcessLabel(pdsDataFile, allowedTypes);
  }


  void ProcessImportPds::ProcessLabel(const QString &pdsDataFile, PdsFileType allowedTypes) {
    // Create a temporary Isis::PvlTranslationManager so we can find out what
    // type of PDS file this is (i.e., Qube or Image or SpectralQube)
    stringstream trnsStrm;
    trnsStrm << "Group = PdsTypeImage" << endl;
    trnsStrm << "  InputPosition = ROOT" << endl;
    trnsStrm << "  InputPosition = FILE" << endl;
    trnsStrm << "  InputPosition = UNCOMPRESSED_FILE" << endl;
    trnsStrm << "  InputKey = ^IMAGE" << endl;
    trnsStrm << "EndGroup" << endl;
    trnsStrm << "Group = PdsTypeL0" << endl;
    trnsStrm << "  InputPosition = L0_FILE" << endl;
    trnsStrm << "  InputKey = ^L0_IMAGE" << endl;
    trnsStrm << "EndGroup" << endl;
    trnsStrm << "Group = PdsTypeRdn" << endl;
    trnsStrm << "  InputPosition = RDN_FILE" << endl;
    trnsStrm << "  InputKey = ^RDN_IMAGE" << endl;
    trnsStrm << "EndGroup" << endl;
    trnsStrm << "Group = PdsTypeLoc" << endl;
    trnsStrm << "  InputPosition = LOC_FILE" << endl;
    trnsStrm << "  InputKey = ^LOC_IMAGE" << endl;
    trnsStrm << "EndGroup" << endl;
    trnsStrm << "Group = PdsTypeObs" << endl;
    trnsStrm << "  InputPosition = OBS_FILE" << endl;
    trnsStrm << "  InputKey = ^OBS_IMAGE" << endl;
    trnsStrm << "EndGroup" << endl;
    trnsStrm << "Group = PdsTypeQube" << endl;
    trnsStrm << "  InputKey = ^QUBE" << endl;
    trnsStrm << "EndGroup" << endl;
    trnsStrm << "Group = PdsTypeSpectralQube" << endl;
    trnsStrm << "  InputKey = ^SPECTRAL_QUBE" << endl;
    trnsStrm << "EndGroup" << endl;
    trnsStrm << "Group = PdsEncodingType" << endl;
    trnsStrm << "  InputPosition = COMPRESSED_FILE" << endl;
    trnsStrm << "  InputKey = ENCODING_TYPE" << endl;
    trnsStrm << "  Translation = (*,*)" << endl;
    trnsStrm << "EndGroup" << endl;
    trnsStrm << "Group = PdsCompressedFile" << endl;
    trnsStrm << "  InputPosition = COMPRESSED_FILE" << endl;
    trnsStrm << "  InputKey = FILE_NAME" << endl;
    trnsStrm << "  Translation = (*,*)" << endl;
    trnsStrm << "EndGroup" << endl;
    trnsStrm << "END";

    Isis::PvlTranslationManager pdsXlater(p_pdsLabel, trnsStrm);

    // Check to see if we are dealing with a JPEG2000 file
    QString str;
    if (pdsXlater.InputHasKeyword("PdsEncodingType")) {
      str = pdsXlater.Translate("PdsEncodingType");
      if (str == "JP2") {
        p_encodingType = JP2;
        str = pdsXlater.Translate("PdsCompressedFile");
        if (pdsDataFile.isEmpty()) {
          Isis::FileName lfile(p_labelFile);
          Isis::FileName ifile(lfile.path() + "/" + str);
          if (ifile.fileExists()) {
            p_jp2File = ifile.expanded();
          }
          else {
            QString tmp = ifile.expanded();
            str = str.toLower();
            ifile = lfile.path() + "/" + str;
            if (ifile.fileExists()) {
              p_jp2File = ifile.expanded();
            }
            else {
              QString msg = "Unable to find input file [" + tmp + "] or [" +
                           ifile.expanded() + "]";
              throw IException(IException::Io, msg, _FILEINFO_);
            }
          }
        }
      }
      else {
        QString msg = "Unsupported encoding type in [" + p_labelFile + "]";
        throw IException(IException::Io, msg, _FILEINFO_);
      }
    }

    // Call the correct label processing
    if ((allowedTypes & Image) == Image && pdsXlater.InputHasKeyword("PdsTypeImage")) {
      ProcessPdsImageLabel(pdsDataFile);
    }
    else if ((allowedTypes & Qube) == Qube && pdsXlater.InputHasKeyword("PdsTypeQube")) {
      ProcessPdsQubeLabel(pdsDataFile, "pdsQube.trn");
    }
    else if ((allowedTypes & SpectralQube) == SpectralQube &&
             pdsXlater.InputHasKeyword("PdsTypeSpectralQube")) {
      ProcessPdsQubeLabel(pdsDataFile, "pdsSpectralQube.trn");
    }
    else if ((allowedTypes & L0) == L0 && pdsXlater.InputHasKeyword("PdsTypeL0")) {
      ProcessPdsM3Label(pdsDataFile, L0);
    }
    else if ((allowedTypes & Rdn) == Rdn && pdsXlater.InputHasKeyword("PdsTypeRdn")) {
      ProcessPdsM3Label(pdsDataFile, Rdn);
    }
    else if ((allowedTypes & Loc) == Loc && pdsXlater.InputHasKeyword("PdsTypeLoc")) {
      ProcessPdsM3Label(pdsDataFile, Loc);
    }
    else if ((allowedTypes & Obs) == Obs && pdsXlater.InputHasKeyword("PdsTypeObs")) {
      ProcessPdsM3Label(pdsDataFile, Obs);
    }
    else {
      QString msg = "Unknown label type in [" + p_labelFile + "]";
      throw IException(IException::Io, msg, _FILEINFO_);
    }

    // Find out if this is a PDS file or an ISIS2 file
    IdentifySource(p_pdsLabel);

    return;
  }


  void ProcessImportPds::ProcessDataFilePointer(Isis::PvlTranslationManager & pdsXlater, const bool & calcOffsetOnly) {
    const PvlKeyword & dataFilePointer = pdsXlater.InputKeyword("DataFilePointer");

    QString dataFileName;
    QString units;
    QString str;
    int offset = -1;

    // If only size 1, we either have a file name or an offset
    // Either way, when we're done with these two ifs, variables offset and
    // dataFileName will be set.
    if (dataFilePointer.size() == 1) {
      try {
        str = pdsXlater.Translate("DataFilePointer");
        offset = toInt(str);
        units = dataFilePointer.unit();
        // Successful? we have an offset, means current, p_labelFile
        // is the location of the data as well
        dataFileName = FileName(p_labelFile).name();
      }
      catch(IException &e) {
        // Failed to parse to an int, means we have a file name
        // No offset given, so we use 1, offsets are 1 based
        offset = 1;
        units = "BYTES";
        dataFileName = str;
      }
    }
    // We must have a filename and an offset, in that order
    // Expection ("filname", <offset>)
    else if (dataFilePointer.size() == 2) {
      dataFileName = pdsXlater.Translate("DataFilePointer", 0);
      offset = IString(pdsXlater.Translate("DataFilePointer", 1)).ToInteger();
      units = dataFilePointer.unit(1);
    }
    // Error, no value
    else if (dataFilePointer.size() == 0) {
      QString msg = "Data file pointer ^IMAGE or ^QUBE has no value, must"
                   "have either file name or offset or both, in [" +
                   p_labelFile + "]";
      throw IException(IException::Unknown, msg, _FILEINFO_);
    }
    // Error, more than two values
    else {
      QString msg = "Improperly formatted data file pointer keyword ^IMAGE or "
                   "^QUBE, in [" + p_labelFile + "], must contain filename "
                   " or offset or both";
      throw IException(IException::Unknown, msg, _FILEINFO_);
    }

    // Now, to handle the values we found
    // the filename first, only do so if calcOffsetOnly is false
    if (!calcOffsetOnly) {
      Isis::FileName labelFile(p_labelFile);

      // If dataFileName isn't empty, and does start at the root, use it
      Isis::FileName dataFile;
      if (dataFileName.size() != 0 && dataFileName.at(0) == '/')
        dataFile = FileName(dataFileName);
      // Otherwise, use the path to it and its name
      else
        dataFile = FileName(labelFile.path() + "/" + dataFileName);

      // If it exists, use it
      if (dataFile.fileExists()) {
        SetInputFile(dataFile.expanded());
      }
      // Retry with downcased name, if still no luck, fail
      else {
        QString tmp = dataFile.expanded();
        dataFileName = dataFileName.toLower();
        dataFile = FileName(labelFile.path() + "/" + dataFileName);
        if (dataFile.fileExists()) {
          SetInputFile(dataFile.expanded());
        }
        else {
          QString msg = "Unable to find input file [" + tmp + "] or [" +
                       dataFile.expanded() + "]";
          throw IException(IException::Io, msg, _FILEINFO_);
        }
      }
    }

    // Now, to handle the offset
    units = units.trimmed();
    if (units == "BYTES" || units == "B") {
      SetFileHeaderBytes(offset - 1);
    }
    else {
      QString recSize = pdsXlater.Translate("DataFileRecordBytes");
      SetFileHeaderBytes((offset - 1) * toInt(recSize));
    }
  }


  void ProcessImportPds::ProcessPixelBitandType(Isis::PvlTranslationManager & pdsXlater) {
    QString str;
    str = pdsXlater.Translate("CoreBitsPerPixel");
    int bitsPerPixel = toInt(str);
    str = pdsXlater.Translate("CorePixelType");
    if ((str == "Real") && (bitsPerPixel == 64)) {
      SetPixelType(Isis::Double);
    }
    else if ((str == "Real") && (bitsPerPixel == 32)) {
      SetPixelType(Isis::Real);
    }
    else if ((str == "Integer") && (bitsPerPixel == 8)) {
      SetPixelType(Isis::UnsignedByte);
    }
    else if ((str == "Integer") && (bitsPerPixel == 16)) {
      SetPixelType(Isis::SignedWord);
    }
    else if ((str == "Integer") && (bitsPerPixel == 32)) {
      SetPixelType(Isis::SignedInteger);
    }
    else if ((str == "Natural") && (bitsPerPixel == 8)) {
      SetPixelType(Isis::UnsignedByte);
    }
    else if ((str == "Natural") && (bitsPerPixel == 16)) {
      SetPixelType(Isis::UnsignedWord);
    }
    else if ((str == "Natural") && (bitsPerPixel == 16)) {
      SetPixelType(Isis::SignedWord);
    }
    else if ((str == "Natural") && (bitsPerPixel == 32)) {
      SetPixelType(Isis::UnsignedInteger);
    }
    else {
      QString msg = "Invalid PixelType and BitsPerPixel combination [" + str +
                   ", " + toString(bitsPerPixel) + "]";
      throw IException(IException::Io, msg, _FILEINFO_);
    }
  }


  void ProcessImportPds::ProcessSpecialPixels(Isis::PvlTranslationManager & pdsXlater, const bool & isQube) {
    QString str;
    // Set any special pixel values
    double pdsNull = Isis::NULL8;
    if (pdsXlater.InputHasKeyword("CoreNull")) {
      str = pdsXlater.Translate("CoreNull");
      if (str != "NULL") {
        pdsNull = toDouble(str);
      }
    }
    else if (!isQube && pdsXlater.InputHasKeyword("CoreNull2")) {
      str = pdsXlater.Translate("CoreNull2");
      if (str != "NULL") {
        pdsNull = toDouble(str);
      }
    }

    double pdsLrs = Isis::Lrs;
    if (pdsXlater.InputHasKeyword("CoreLrs")) {
      str = pdsXlater.Translate("CoreLrs");
      if (str != "NULL") {
        pdsLrs = toDouble(str);
      }
    }
    else if (!isQube && pdsXlater.InputHasKeyword("CoreLrs2")) {
      str = pdsXlater.Translate("CoreLrs2");
      if (str != "NULL") {
        pdsLrs = toDouble(str);
      }
    }

    double pdsLis = Isis::Lis;
    if (pdsXlater.InputHasKeyword("CoreLis")) {
      str = pdsXlater.Translate("CoreLis");
      if (str != "NULL") {
        pdsLis = toDouble(str);
      }
    }
    else if (!isQube && pdsXlater.InputHasKeyword("CoreLis2")) {
      str = pdsXlater.Translate("CoreLis2");
      if (str != "NULL") {
        pdsLis = toDouble(str);
      }
    }

    double pdsHrs = Isis::Hrs;
    if (pdsXlater.InputHasKeyword("CoreHrs")) {
      str = pdsXlater.Translate("CoreHrs");
      if (str != "NULL") {
        pdsHrs = toDouble(str);
      }
    }
    else if (!isQube && pdsXlater.InputHasKeyword("CoreHrs2")) {
      str = pdsXlater.Translate("CoreHrs2");
      if (str != "NULL") {
        pdsHrs = toDouble(str);
      }
    }

    double pdsHis = Isis::His;
    if (pdsXlater.InputHasKeyword("CoreHis")) {
      str = pdsXlater.Translate("CoreHis");
      if (str != "NULL") {
        pdsHis = toDouble(str);
      }
    }
    else if (!isQube && pdsXlater.InputHasKeyword("CoreHis2")) {
      str = pdsXlater.Translate("CoreHis2");
      if (str != "NULL") {
        pdsHis = toDouble(str);
      }
    }

    SetSpecialValues(pdsNull, pdsLrs, pdsLis, pdsHrs, pdsHis);
  }


  void ProcessImportPds::ProcessPdsImageLabel(const QString &pdsDataFile) {
    Isis::FileName transFile(p_transDir + "/translations/pdsImage.trn");
    Isis::PvlTranslationManager pdsXlater(p_pdsLabel, transFile.expanded());

    QString str;

    str = pdsXlater.Translate("CoreLinePrefixBytes");
    SetDataPrefixBytes(toInt(str));

    str = pdsXlater.Translate("CoreLineSuffixBytes");
    SetDataSuffixBytes(toInt(str));

    ProcessPixelBitandType(pdsXlater);

    str = pdsXlater.Translate("CoreByteOrder");
    SetByteOrder(Isis::ByteOrderEnumeration(str));

    str = pdsXlater.Translate("CoreSamples");
    int ns = toInt(str);
    str = pdsXlater.Translate("CoreLines");
    int nl = toInt(str);
    str = pdsXlater.Translate("CoreBands");
    int nb = toInt(str);
    SetDimensions(ns, nl, nb);

    // Set any special pixel values, not qube, so use false
    ProcessSpecialPixels(pdsXlater, false);

    //-----------------------------------------------------------------
    // Find the data filename it may be the same as the label file
    // OR the label file may contain a pointer to the data
    //-----------------------------------------------------------------

    // Use the name supplied by the application if it is there
    if (pdsDataFile.length() > 0) {
      SetInputFile(pdsDataFile);
      ProcessDataFilePointer(pdsXlater, true);
    }
    // If the data is in JPEG 2000 format, then use the name of the file
    // from the label
    else if (p_jp2File.length() > 0) {
      SetInputFile(p_jp2File);
      ProcessDataFilePointer(pdsXlater, true);
    }
    // Use the "^IMAGE or ^QUBE" label to get the filename for the image data
    // Get the path portion from user entered label file spec
    else {
      // Handle filename and offset
      ProcessDataFilePointer(pdsXlater, false);
    }

    //------------------------------------------------------------
    // Find the image data base and multiplier
    //------------------------------------------------------------
    str = pdsXlater.Translate("CoreBase");
    SetBase(toDouble(str));
    str = pdsXlater.Translate("CoreMultiplier");
    SetMultiplier(toDouble(str));

    // Find the organization of the image data
    str = pdsXlater.Translate("CoreOrganization");

    if (p_encodingType == JP2) {
      SetOrganization(ProcessImport::JP2);
    }
    else if (str == "BSQ") {
      SetOrganization(ProcessImport::BSQ);
    }
    else if (str == "BIP") {
      SetOrganization(ProcessImport::BIP);
    }
    else if (str == "BIL") {
      SetOrganization(ProcessImport::BIL);
    }
    else {
      QString msg = "Unsupported axis order [" + str + "]";
      throw IException(IException::Programmer, msg, _FILEINFO_);
    }
  }


  void ProcessImportPds::ProcessPdsQubeLabel(const QString &pdsDataFile,
      const QString &transFile) {

    Isis::FileName tFile(p_transDir + "/translations/" + transFile);

    Isis::PvlTranslationManager pdsXlater(p_pdsLabel, tFile.expanded());

    QString str;

    // Find the organization of the image data
    // Save off which axis the samples, lines and bands are on
    int linePos = 0;
    int samplePos = 0;
    int bandPos = 0;
    int val = pdsXlater.InputKeyword("CoreOrganization").size();
    QString tmp = "";
    for(int i = 0; i < val; i++) {
      str = pdsXlater.Translate("CoreOrganization", i);
      tmp += str;
      if (str == "SAMPLE") {
        samplePos = i;
      }
      else if (str == "LINE") {
        linePos = i;
      }
      else if (str == "BAND") {
        bandPos = i;
      }
      else {
        QString message = "Unknown file axis name [" + str + "]";
        throw IException(IException::User, message, _FILEINFO_);
      }
    }

    if (p_encodingType == JP2) {
      SetOrganization(ProcessImport::JP2);
    }
    else if (tmp == "SAMPLELINEBAND") {
      SetOrganization(ProcessImport::BSQ);
    }
    else if (tmp == "BANDSAMPLELINE") {
      SetOrganization(ProcessImport::BIP);
    }
    else if (tmp == "SAMPLEBANDLINE") {
      SetOrganization(ProcessImport::BIL);
    }
    else {
      PvlKeyword pdsCoreOrg = p_pdsLabel.findKeyword(pdsXlater.
          InputKeywordName("CoreOrganization"), Pvl::Traverse);

      stringstream pdsCoreOrgStream;
      pdsCoreOrgStream << pdsCoreOrg;

      QString msg = "Unsupported axis order [" + QString(pdsCoreOrgStream.str().c_str()) + "]";
      throw IException(IException::Programmer, msg, _FILEINFO_);
    }


    // Set the number of byte preceding the second dimension (left side plane)
    // There are no capabilities in a PDS QUBE for this
    SetDataPrefixBytes(0);

    // Set the number of bytes following the second dimension (right side plane)
    str = pdsXlater.Translate("SuffixItemSize");
    int suffix = toInt(str);
    str = pdsXlater.Translate("AxisSuffixCount", 0);
    suffix *= toInt(str);
    SetDataSuffixBytes(suffix);

    str = pdsXlater.Translate("SuffixItemSize");
    int trailer = toInt(str);
    str = pdsXlater.Translate("AxisSuffixCount", 1);
    trailer *= toInt(str);
    str = pdsXlater.Translate("CoreSamples", samplePos);
    trailer *= toInt(str);
    trailer += suffix;
    SetDataTrailerBytes(trailer);

    ProcessPixelBitandType(pdsXlater);

    // Set the byte order
    str = pdsXlater.Translate("CoreByteOrder");
    SetByteOrder(Isis::ByteOrderEnumeration(str));

    // Set the number of samples, lines and bands
    str = pdsXlater.Translate("CoreSamples", samplePos);
    int ns = toInt(str);
    str = pdsXlater.Translate("CoreLines", linePos);
    int nl = toInt(str);
    str = pdsXlater.Translate("CoreBands", bandPos);
    int nb = toInt(str);
    SetDimensions(ns, nl, nb);

    // Set any special pixels values, qube, so use true
    ProcessSpecialPixels(pdsXlater, true);

    //---------------------------------------------------------------
    // Find the data filename, it may be the same as the label file
    // Or the label file may contain a pointer to the data
    //---------------------------------------------------------------

    // Use the name supplied by the application if it is there
    if (pdsDataFile.length() > 0) {
      SetInputFile(pdsDataFile);
      ProcessDataFilePointer(pdsXlater, true);
    }
    // If the data is in JPEG 2000 format, then use the name of the file
    // from the label
    else if (p_jp2File.length() > 0) {
      SetInputFile(p_jp2File);
      ProcessDataFilePointer(pdsXlater, true);
    }
    else {
      // Handle filename and offset
      ProcessDataFilePointer(pdsXlater, false);
    }


    //------------------------------------------------------------
    // Find the image data base and multiplier
    //------------------------------------------------------------
    // First see if there are base and multiplier in the band bin group
    if ((pdsXlater.InputHasKeyword("BandBase")) &&
        (pdsXlater.InputHasKeyword("BandMultiplier"))) {
      vector<double> bases;
      vector<double> mults;
      for(int i = 0; i < pdsXlater.InputKeyword("BandBase").size(); i++) {
        str = pdsXlater.Translate("BandBase", i);
        bases.push_back(toDouble(str));
        str = pdsXlater.Translate("BandMultiplier", i);
        mults.push_back(toDouble(str));
      }
      SetBase(bases);
      SetMultiplier(mults);
    }
    else {
      str = pdsXlater.Translate("CoreBase");
      SetBase(toDouble(str));
      str = pdsXlater.Translate("CoreMultiplier");
      SetMultiplier(toDouble(str));
    }
  }


  void ProcessImportPds::ProcessPdsM3Label(const QString &pdsDataFile, PdsFileType fileType) {
    Isis::FileName transFile;
    if (fileType == L0) {
      transFile = p_transDir + "/translations/pdsL0.trn";
    }
    else if (fileType == Rdn) {
      transFile = p_transDir + "/translations/pdsRdn.trn";
    }
    else if (fileType == Loc) {
      transFile = p_transDir + "/translations/pdsLoc.trn";
    }
    else if (fileType == Obs) {
      transFile = p_transDir + "/translations/pdsObs.trn";
    }
    else {
      throw IException(IException::Programmer, "ProcessImportPds::ProcessPdsM3Label can only be "
                       "called with file type of L0, Rdn, Loc or Obs.", _FILEINFO_);
    }
    Isis::PvlTranslationManager pdsXlater(p_pdsLabel, transFile.expanded());

    QString str;

    //  L1B (Rdn) products do not have an prefix or suffix data.  L0 have 1280 bytes at the
    //  beginning of each line of the BIL formatted file.
    str = pdsXlater.Translate("CoreLinePrefixBytes");
    SetDataHeaderBytes(toInt(str));

    str = pdsXlater.Translate("CoreLineSuffixBytes");
    SetDataSuffixBytes(toInt(str));

    ProcessPixelBitandType(pdsXlater);

    str = pdsXlater.Translate("CoreByteOrder");
    SetByteOrder(Isis::ByteOrderEnumeration(str));

    str = pdsXlater.Translate("CoreSamples");
    int ns = toInt(str);
    str = pdsXlater.Translate("CoreLines");
    int nl = toInt(str);
    str = pdsXlater.Translate("CoreBands");
    int nb = toInt(str);
    SetDimensions(ns, nl, nb);

    // Set any special pixel values, not qube, so use false
    ProcessSpecialPixels(pdsXlater, false);

    //-----------------------------------------------------------------
    // Find the data filename it may be the same as the label file
    // OR the label file may contain a pointer to the data
    //-----------------------------------------------------------------

    // Use the name supplied by the application if it is there
    if (pdsDataFile.length() > 0) {
      SetInputFile(pdsDataFile);
      ProcessDataFilePointer(pdsXlater, true);
    }
    // If the data is in JPEG 2000 format, then use the name of the file
    // from the label
    else if (p_jp2File.length() > 0) {
      SetInputFile(p_jp2File);
      ProcessDataFilePointer(pdsXlater, true);
    }
    // Use the "^IMAGE or ^QUBE" label to get the filename for the image data
    // Get the path portion from user entered label file spec
    else {
      // Handle filename and offset
      ProcessDataFilePointer(pdsXlater, false);
    }

    //------------------------------------------------------------
    // Find the image data base and multiplier
    //------------------------------------------------------------
    str = pdsXlater.Translate("CoreBase");
    SetBase(toDouble(str));
    str = pdsXlater.Translate("CoreMultiplier");
    SetMultiplier(toDouble(str));

    // Find the organization of the image data
    str = pdsXlater.Translate("CoreOrganization");

    if (p_encodingType == JP2) {
      SetOrganization(ProcessImport::JP2);
    }
    else if (str == "BSQ") {
      SetOrganization(ProcessImport::BSQ);
    }
    else if (str == "BIP") {
      SetOrganization(ProcessImport::BIP);
    }
    else if (str == "BIL") {
      SetOrganization(ProcessImport::BIL);
    }
    else {
      QString msg = "Unsupported axis order [" + str + "]";
      throw IException(IException::Programmer, msg, _FILEINFO_);
    }
  }


  void ProcessImportPds::TranslatePdsProjection(Isis::Pvl &lab) {

    // Create a temporary Isis::PvlTranslationManager so we can find out what
    // type of projection labels exist
    stringstream trnsStrm;
    trnsStrm << "Group = PdsProjectionTypeImage" << endl;
    trnsStrm << "  InputPosition = IMAGE_MAP_PROJECTION" << endl;
    trnsStrm << "  InputPosition = IMAGE_MAP_PROJECTION_CATALOG" << endl;
    trnsStrm << "  InputKey = MAP_PROJECTION_TYPE" << endl;
    trnsStrm << "EndGroup" << endl;
    trnsStrm << "Group = PdsProjectionTypeQube" << endl;
    trnsStrm << "  InputPosition = (QUBE,IMAGE_MAP_PROJECTION)" << endl;
    trnsStrm << "  InputKey = MAP_PROJECTION_TYPE" << endl;
    trnsStrm << "EndGroup" << endl;
    trnsStrm << "Group = PdsProjectionTypeSpectralQube" << endl;
    trnsStrm << "  InputPosition = (SPECTRAL_QUBE,IMAGE_MAP_PROJECTION)" << endl;
    trnsStrm << "  InputKey = MAP_PROJECTION_TYPE" << endl;
    trnsStrm << "EndGroup" << endl;
    trnsStrm << "END";

    Isis::PvlTranslationManager projType(p_pdsLabel, trnsStrm);

    // Set up the correct projection translation table for this label
    Isis::PvlGroup &dataDir = Isis::Preference::Preferences().findGroup("DataDirectory");
    QString transDir = (QString) dataDir["Base"];

    Isis::FileName transFile;
    if (projType.InputHasKeyword("PdsProjectionTypeImage")) {
      transFile = transDir + "/" + "translations/pdsImageProjection.trn";
    }
    else if (projType.InputHasKeyword("PdsProjectionTypeQube")) {
      transFile = transDir + "/" + "translations/pdsQubeProjection.trn";
    }
    else if (projType.InputHasKeyword("PdsProjectionTypeSpectralQube")) {
      transFile = transDir + "/" + "translations/pdsSpectralQubeProjection.trn";
    }
    else {
      return;
    }

    Isis::PvlTranslationManager pdsXlater(p_pdsLabel, transFile.expanded());

    ExtractPdsProjection(pdsXlater);

    Isis::PvlGroup mapGroup("Mapping");
    mapGroup += Isis::PvlKeyword("ProjectionName", p_projection);
    mapGroup += Isis::PvlKeyword("TargetName", p_targetName);
    mapGroup += Isis::PvlKeyword("EquatorialRadius", toString(p_equatorialRadius), "meters");
    mapGroup += Isis::PvlKeyword("PolarRadius", toString(p_polarRadius), "meters");
    mapGroup += Isis::PvlKeyword("LongitudeDirection", p_longitudeDirection);
    mapGroup += Isis::PvlKeyword("LongitudeDomain", toString(p_longitudeDomain));
    mapGroup += Isis::PvlKeyword("LatitudeType", p_latitudeType);
    if (p_minimumLatitude != Isis::NULL8) {
      mapGroup += Isis::PvlKeyword("MinimumLatitude", toString(p_minimumLatitude));
    }
    if (p_maximumLatitude != Isis::NULL8) {
      mapGroup += Isis::PvlKeyword("MaximumLatitude", toString(p_maximumLatitude));
    }
    if (p_minimumLongitude != Isis::NULL8) {
      mapGroup += Isis::PvlKeyword("MinimumLongitude", toString(p_minimumLongitude));
    }
    if (p_maximumLongitude != Isis::NULL8) {
      mapGroup += Isis::PvlKeyword("MaximumLongitude", toString(p_maximumLongitude));
    }

    // if both longitudes exist, verify they are ordered correctly
    if (p_minimumLongitude != Isis::NULL8 && p_maximumLongitude != Isis::NULL8) {
      if (p_maximumLongitude <= p_minimumLongitude) {
        if (p_longitudeDomain == 180) {
          mapGroup["MinimumLongitude"] = toString(-180);
          mapGroup["MaximumLongitude"] = toString(180);
        }
        else {
          mapGroup["MinimumLongitude"] = toString(0);
          mapGroup["MaximumLongitude"] = toString(360);
        }
      }
    }

    mapGroup += Isis::PvlKeyword("PixelResolution", toString(p_pixelResolution), "meters/pixel");
    mapGroup += Isis::PvlKeyword("Scale", toString(p_scaleFactor), "pixels/degree");
    mapGroup += Isis::PvlKeyword("UpperLeftCornerX", toString(p_upperLeftX), "meters");
    mapGroup += Isis::PvlKeyword("UpperLeftCornerY", toString(p_upperLeftY), "meters");
    if (p_rotation != 0.0) {
      mapGroup += Isis::PvlKeyword("Rotation", toString(p_rotation));
    }

    // To handle new projections without the need to modify source code
    // we will construct a filename from the projection.  The filename will
    // contain the projection specific translations from PDS to ISIS for each
    // projection

    QString projSpecificFileName = "$base/translations/pdsImport";
    projSpecificFileName += p_projection + ".trn";
    Isis::PvlTranslationManager specificXlater(p_pdsLabel, projSpecificFileName);

    lab.addGroup(mapGroup);
    specificXlater.Auto(lab);

    if (lab.findGroup("Mapping").hasKeyword("CenterLongitude")) {
      PvlKeyword &centerLon = lab.findGroup("Mapping")["CenterLongitude"];
      if (p_longitudeDomain == 180)
        centerLon = toString(TProjection::To180Domain((double)centerLon));
      else
        centerLon = toString(TProjection::To360Domain((double)centerLon));
    }

    if (lab.findGroup("Mapping").hasKeyword("PoleLongitude")) {
      PvlKeyword &poleLon = lab.findGroup("Mapping")["PoleLongitude"];
      if (p_longitudeDomain == 180)
        poleLon = toString(TProjection::To180Domain((double)poleLon));
      else
        poleLon = toString(TProjection::To360Domain((double)poleLon));
    }

    OutputCubes[0]->putGroup(lab.findGroup("Mapping"));
  }


  void ProcessImportPds::ExtractPdsProjection(Isis::PvlTranslationManager &pdsXlater) {

    QString str;

    if (pdsXlater.InputHasKeyword("ProjectionName")) {
      p_projection = pdsXlater.Translate("ProjectionName");
    }
    else {
      QString message = "No projection name in labels";
      throw IException(IException::Unknown, message, _FILEINFO_);
    }

    if (pdsXlater.InputHasKeyword("TargetName")) {
      p_targetName = pdsXlater.Translate("TargetName");
    }
    else {
      QString message = "No target name in labels";
      throw IException(IException::Unknown, message, _FILEINFO_);
    }

    if (pdsXlater.InputHasKeyword("EquatorialRadius")) {
      str = pdsXlater.Translate("EquatorialRadius");
      p_equatorialRadius = toDouble(str) * 1000.0;
    }
    else {
      QString message = "No equatorial radius name in labels";
      throw IException(IException::User, message, _FILEINFO_);
    }

    if (pdsXlater.InputHasKeyword("PolarRadius")) {
      str = pdsXlater.Translate("PolarRadius");
      p_polarRadius = toDouble(str) * 1000.0;
    }
    else {
      QString message = "No polar radius in labels";
      throw IException(IException::User, message, _FILEINFO_);
    }

    if (pdsXlater.InputHasKeyword("LongitudeDirection")) {
      p_longitudeDirection = pdsXlater.Translate("LongitudeDirection");
    }
    else {
      p_longitudeDirection = pdsXlater.Translate("LongitudeDirection2");
    }

    if (p_polarRadius == p_equatorialRadius) {
      p_latitudeType = "Planetocentric";
    }
    else if (pdsXlater.InputHasKeyword("LatitudeType2")) {
      p_latitudeType = pdsXlater.Translate("LatitudeType2");
    }
    else {
      p_latitudeType = pdsXlater.Translate("LatitudeType");
    }

    if (pdsXlater.InputHasKeyword("MinimumLatitude")) {
      str = pdsXlater.Translate("MinimumLatitude");
      try {
        p_minimumLatitude = toDouble(str);
      }
      catch(IException &e) {
        p_minimumLatitude = Isis::NULL8;
      }
    }
    else {
      p_minimumLatitude = Isis::NULL8;
    }

    if (pdsXlater.InputHasKeyword("MaximumLatitude")) {
      str = pdsXlater.Translate("MaximumLatitude");
      try {
        p_maximumLatitude = toDouble(str);
      }
      catch(IException &e) {
        p_maximumLatitude = Isis::NULL8;
      }
    }
    else {
      p_maximumLatitude = Isis::NULL8;
    }

    // This variable represents if the longitudes were read in as
    //   positive west
    bool positiveWest = false;
    if (pdsXlater.InputHasKeyword("MinimumLongitude")) {
      str = pdsXlater.Translate("MinimumLongitude");
      try {
        positiveWest = true;
        p_minimumLongitude = toDouble(str);
      }
      catch(IException &e) {
        p_minimumLongitude = Isis::NULL8;
      }
    }
    else if (pdsXlater.InputHasKeyword("MinimumLongitude2")) {
      str = pdsXlater.Translate("MinimumLongitude2");
      try {
        p_minimumLongitude = toDouble(str);
      }
      catch(IException &e) {
        p_minimumLongitude = Isis::NULL8;
      }
    }
    else {
      p_minimumLongitude = Isis::NULL8;
    }

    if (pdsXlater.InputHasKeyword("MaximumLongitude")) {
      str = pdsXlater.Translate("MaximumLongitude");
      try {
        positiveWest = true;
        p_maximumLongitude = toDouble(str);
      }
      catch(IException &e) {
        p_maximumLongitude = Isis::NULL8;
      }
    }
    else if (pdsXlater.InputHasKeyword("MaximumLongitude2")) {
      str = pdsXlater.Translate("MaximumLongitude2");
      try {
        p_maximumLongitude = toDouble(str);
      }
      catch(IException &e) {
        p_maximumLongitude = Isis::NULL8;
      }
    }
    else {
      p_maximumLongitude = Isis::NULL8;
    }

    str = pdsXlater.Translate("LongitudeDomain");
    p_longitudeDomain = toInt(str);

    if (positiveWest && (p_longitudeDirection.compare("PositiveEast") == 0)) {
      double tmp = p_minimumLongitude;
      p_minimumLongitude = p_maximumLongitude;
      p_maximumLongitude = tmp;
    }

    if (p_minimumLongitude > p_maximumLongitude) {
      // Force the change to 180
      p_longitudeDomain = 180;
      p_minimumLongitude = Isis::TProjection::To180Domain(p_minimumLongitude);
    }

    //  If either the minimumLongitude or maximumLongitude are < 0, change
    //  longitude Domain to 180.
    if (p_minimumLongitude < 0 || p_maximumLongitude < 0) {
      p_longitudeDomain = 180;
    }

    str = pdsXlater.Translate("PixelResolution");
    p_pixelResolution = toDouble(str);
    str = pdsXlater.InputKeyword("PixelResolution").unit().toUpper();
    // Assume KM/PIXEL if the unit doesn't exist or is not METERS/PIXEL
    if ((str != "METERS/PIXEL") && (str != "M/PIXEL") && (str != "M/PIX")) {
      p_pixelResolution *= 1000.0;
    }

    str = pdsXlater.Translate("Scale");
    p_scaleFactor = toDouble(str);

    try {
      str = pdsXlater.Translate("Rotation");
      p_rotation = toDouble(str);
    }
    catch(IException &) {
      // assume no rotation if the value isn't a number
      p_rotation = 0.0;
    }

    //  Look for projection offsets/mults to convert between line/samp and x/y
    double xoff, yoff, xmult, ymult;
    GetProjectionOffsetMults(xoff, yoff, xmult, ymult);

    if (pdsXlater.InputHasKeyword("LineProjectionOffset")) {
      str = pdsXlater.Translate("LineProjectionOffset");
    }
    else {
      str = pdsXlater.Translate("LineProjectionOffset2");
    }
    p_lineProjectionOffset = toDouble(str);
    p_upperLeftY = ymult * (p_lineProjectionOffset + yoff) * p_pixelResolution;

    if (pdsXlater.InputHasKeyword("SampleProjectionOffset")) {
      str = pdsXlater.Translate("SampleProjectionOffset");
    }
    else {
      str = pdsXlater.Translate("SampleProjectionOffset2");
    }
    p_sampleProjectionOffset = toDouble(str);
    p_upperLeftX = xmult * (p_sampleProjectionOffset + xoff) * p_pixelResolution;


  }


  void ProcessImportPds::EndProcess() {
    ProcessImportPds::Finalize();
  }


  void ProcessImportPds::Finalize() {
    if (p_keepOriginalLabel) {
      OriginalLabel ol(p_pdsLabel);
      for (unsigned int i = 0; i < OutputCubes.size(); i++) {
        OutputCubes[i]->write(ol);
      }
    }
    Process::Finalize();
  }


  void ProcessImportPds::OmitOriginalLabel() {
    p_keepOriginalLabel = false;
  }


  void ProcessImportPds::IdentifySource(Isis::Pvl &inputLabel) {

    // Create a temporary Isis::PvlTranslationManager so we can find out what
    // type of input file we have
    stringstream trnsStrm;
    trnsStrm << "Group = PdsFile" << endl;
    trnsStrm << "  InputPosition = ROOT" << endl;
    trnsStrm << "  InputKey = PDS_VERSION_ID" << endl;
    trnsStrm << "EndGroup" << endl;
    trnsStrm << "Group = Isis2File" << endl;
    trnsStrm << "  InputPosition = ROOT" << endl;
    trnsStrm << "  InputKey = CCSD3ZF0000100000001NJPL3IF0PDS200000001" << endl;
    trnsStrm << "EndGroup" << endl;
    trnsStrm << "END";

    Isis::PvlTranslationManager sourceXlater(inputLabel, trnsStrm);

    if (sourceXlater.InputHasKeyword("PdsFile")) {
      p_source = PDS;
    }
    else if (sourceXlater.InputHasKeyword("Isis2File")) {
      p_source = ISIS2;
    }
    else {
      p_source = NOSOURCE;
    }

  }


  bool ProcessImportPds::IsIsis2() {

    if (p_source == ISIS2) {
      return true;
    }
    else {
      return false;
    }
  }


  void ProcessImportPds::TranslateIsis2Labels(Isis::Pvl &lab) {
    TranslateIsis2BandBin(lab);
    TranslateIsis2Instrument(lab);
  }


  void ProcessImportPds::TranslatePdsLabels(Isis::Pvl &lab) {
    TranslatePdsBandBin(lab);
    TranslatePdsArchive(lab);
  }


  void ProcessImportPds::TranslateIsis2BandBin(Isis::Pvl &lab) {
    // Set up a translater for Isis2 labels
    Isis::PvlGroup &dataDir = Isis::Preference::Preferences().findGroup("DataDirectory");
    QString transDir = (QString) dataDir["Base"];

    Isis::FileName transFile(transDir + "/" + "translations/isis2bandbin.trn");
    Isis::PvlTranslationManager isis2Xlater(p_pdsLabel, transFile.expanded());

    // Add all the Isis2 keywords that can be translated to the requested label
    isis2Xlater.Auto(lab);
  }


  void ProcessImportPds::TranslateIsis2Instrument(Isis::Pvl &lab) {
    // Set up a translater for Isis2 labels
    Isis::PvlGroup &dataDir = Isis::Preference::Preferences().findGroup("DataDirectory");
    QString transDir = (QString) dataDir["Base"];
    Isis::FileName transFile(transDir + "/" + "translations/isis2instrument.trn");
    Isis::PvlTranslationManager isis2Xlater(p_pdsLabel, transFile.expanded());

    // Add all the Isis2 keywords that can be translated to the requested label
    isis2Xlater.Auto(lab);

    //Check StartTime for appended 'z' (Zulu time) and remove
    Isis::PvlGroup &inst = lab.findGroup("Instrument");

    if (inst.hasKeyword("StartTime")) {
      Isis::PvlKeyword &stkey = inst["StartTime"];
      QString stime = stkey[0];
      stime = stime.remove(QRegExp("[Zz]$"));
      stkey = stime;
    }
  }


  void ProcessImportPds::TranslatePdsBandBin(Isis::Pvl &lab) {
    // Set up a translater for PDS labels
    Isis::FileName transFile(p_transDir + "/" + "translations/pdsImageBandBin.trn");
    Isis::PvlTranslationManager isis2Xlater(p_pdsLabel, transFile.expanded());

    // Add all the Isis2 keywords that can be translated to the requested label
    isis2Xlater.Auto(lab);
  }


  void ProcessImportPds::TranslatePdsArchive(Isis::Pvl &lab) {
    // Set up a translater for PDS labels
    Isis::FileName transFile(p_transDir + "/" + "translations/pdsImageArchive.trn");
    Isis::PvlTranslationManager isis2Xlater(p_pdsLabel, transFile.expanded());

    // Add all the Isis2 keywords that can be translated to the requested label
    isis2Xlater.Auto(lab);
  }


  void ProcessImportPds::GetProjectionOffsetMults(double &xoff, double &yoff,
      double &xmult, double &ymult) {

    xmult = -1.0;
    ymult = 1.0;
    xoff = -0.5;
    yoff = -0.5;

    //  Open projectionOffsetMults file
    Isis::Pvl p(p_transDir + "/" + "translations/pdsProjectionLineSampToXY.def");

    Isis::PvlObject &projDef = p.findObject("ProjectionOffsetMults",
                                            Pvl::Traverse);

    for(int g = 0; g < projDef.groups(); g++) {
      QString key = projDef.group(g)["Keyword"];
      if (p_pdsLabel.hasKeyword(key)) {
        QString value = p_pdsLabel[key];
        QString pattern = projDef.group(g)["Pattern"];
        //  If value contains pattern, then set the mults to what is in translation file
        if (value.contains(pattern)) {
          xmult = projDef.group(g)["xMult"];
          ymult = projDef.group(g)["yMult"];
          xoff = projDef.group(g)["xOff"];
          yoff = projDef.group(g)["yOff"];
          return;
        }
      }
    }
  }


  Table &ProcessImportPds::ImportTable(QString pdsTableName) {
    // No table file given, let ImportPdsTable find it.
    ImportPdsTable pdsTable(p_labelFile, "", pdsTableName);
    // reformat the table name. If the name ends with the word "Table", remove
    // it. (So, for example, INSTRUMENT_POINTING_TABLE gets formatted to
    // InstrumentPointingTable and then to InstrumentPointing)
    QString isisTableName = pdsTable.getFormattedName(pdsTableName);
    int found = isisTableName.lastIndexOf("Table");
    if (found == isisTableName.length() - 5) {
      isisTableName.remove(found, 5);
    }

    Table isisTable = pdsTable.importTable(isisTableName);
    p_tables.push_back(isisTable);

    return p_tables.at(p_tables.size() - 1);
  }


  void ProcessImportPds::StartProcess() {
    ProcessImport::StartProcess();
    for (unsigned int i = 0; i < p_tables.size(); i++) {
      OutputCubes[0]->write(p_tables[i]);
    }
    return;
  }


  void ProcessImportPds::StartProcess(void funct(Isis::Buffer &out)) {
    ProcessImport::StartProcess(funct);
    return;
  }
}