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Process cubes using a Filter Object. More...
#include <ProcessByQuickFilter.h>
Public Member Functions | |
ProcessByQuickFilter () | |
Constructs a FilterProcess object. | |
virtual void | StartProcess (void funct(Isis::Buffer &in, Isis::Buffer &out, Isis::QuickFilter &filter)) |
This method invokes the process on a line by line basis. | |
void | ProcessCube (void funct(Isis::Buffer &in, Isis::Buffer &out, Isis::QuickFilter &filter)) |
void | SetFilterParameters (int samples, int lines, double low=-DBL_MAX, double high=DBL_MAX, int minimum=0) |
This method allows the programmer to set the filter parameters. | |
virtual void | StartProcess (void funct()) |
In the base class, this method will invoked a user-specified function exactly one time. | |
virtual void | EndProcess () |
End the processing sequence and cleans up by closing cubes, freeing memory, etc. | |
virtual void | Finalize () |
Cleans up by closing cubes and freeing memory for owned cubes. | |
virtual Isis::Cube * | SetInputCube (const QString ¶meter, const int requirements=0) |
Opens an input cube specified by the user and verifies requirements are met. | |
virtual Isis::Cube * | SetInputCube (const QString &fname, const Isis::CubeAttributeInput &att, int requirements=0) |
Opens an input cube specified by the programmer and verifies requirements are met. | |
virtual void | SetInputCube (Isis::Cube *inCube) |
Set the InputCube vector to an opened Cube which was dynamically allocated. | |
virtual Isis::Cube * | SetOutputCube (const QString ¶meter) |
Allocates a user-specified output cube whose size matches the first input cube. | |
virtual Isis::Cube * | SetOutputCube (const QString ¶meter, const int nsamps, const int nlines, const int nbands=1) |
Allocates a user specified output cube whose size is specified by the programmer. | |
virtual Isis::Cube * | SetOutputCube (const QString &fname, const Isis::CubeAttributeOutput &att, const int nsamps, const int nlines, const int nbands=1) |
Allocates a output cube whose name and size is specified by the programmer. | |
void | AddInputCube (Cube *cube, bool owned=true) |
void | AddOutputCube (Cube *cube, bool owned=true) |
void | ClearCubes () |
Close owned cubes from the list and clear the list. | |
void | ClearInputCubes () |
Close owned input cubes from the list and clear the list. | |
void | ClearOutputCubes () |
Close owned output cubes from the list and clear the list. | |
void | PropagateLabels (const bool prop) |
This method allows the programmer to turn on/off the propagation of labels from the 1st input cube to any of the output cubes. | |
void | PropagateLabels (const QString &cube) |
This method allows the programmer to propagate labels from a specific secondary cube. | |
void | PropagateTables (const bool prop) |
This method allows the programmer to propagate input tables to the output cube (default is true) | |
void | PropagateTables (const QString &fromName) |
Propagate the tables from the cube with the given filename to the output cube. | |
void | PropagatePolygons (const bool prop) |
This method allows the programmer to propagate input blobs to the output cube (default is true) | |
void | PropagateHistory (const bool prop) |
This method allows the programmer to propagate history to the output cube (default is true) | |
void | PropagateOriginalLabel (const bool prop) |
This method allows the programmer to propagate original labels to the output cube (default is true) | |
Isis::Progress * | Progress () |
This method returns a pointer to a Progress object. | |
QString | MissionData (const QString &mission, const QString &file, bool highestVersion=false) |
This method reads the mission specific data directory from the user preference file, makes sure that mission is available in the Isis installation, and the attaches the provided input file to the directory in order to create a full file specification. | |
void | WriteHistory (Cube &cube) |
Writes out the History blob to the cube. | |
void | CalculateStatistics () |
Calculates and stores off statistics on every band of every cube added to this process via the SetInputCube method. | |
std::vector< Isis::Statistics * > | BandStatistics (const unsigned index) |
Get the vector of Statistics objects for each band separately of a specified input cube. | |
Isis::Statistics * | CubeStatistics (const unsigned index) |
Get the Statistics object for all bands of a specified input cube. | |
Protected Attributes | |
Isis::Progress * | p_progress |
Pointer to a Progress object. | |
bool | p_propagateLabels |
Flag indicating if labels are be propagated to output cubes. | |
bool | p_propagateTables |
Flag indicating if tables are be propagated to output cubes. | |
bool | p_propagatePolygons |
Flag indicating if blobs are be propagated to output cubes. | |
bool | p_propagateHistory |
Flag indicating if history is to be propagated to output cubes. | |
bool | p_propagateOriginalLabel |
Flag indicating if original lable is to be propagated to output cubes. | |
std::vector< std::vector < Isis::Statistics * > > | p_bandStats |
Holds the calculated statistics for each band separately of every input cubei after the CalculateStatistics method is called. | |
std::vector< Isis::Statistics * > | p_cubeStats |
Holds the calculated statistics for every band together of every input cubei after the CalculateStatistics method is called. | |
std::vector< Isis::Cube * > | InputCubes |
A vector of pointers to opened Cube objects. | |
std::vector< Isis::Cube * > | OutputCubes |
A vector of pointers to allocated Cube objects. | |
QSet< Isis::Cube * > * | m_ownedCubes |
A list of cubes owned by this instant. | |
Private Member Functions | |
void | GetFilterParameters () |
This method allows the user to input the filter parameters. | |
Private Attributes | |
bool | p_getParametersFromUser |
Flag to indicate whether or not to get | |
int | p_boxcarSamples |
Number of samples in the boxcar. | |
int | p_boxcarLines |
Number of lines in the boxcar. | |
int | p_minimum |
Minimum number of valid pixels in the sample-by-line boxcar in order for statistical computations to be valid. | |
double | p_low |
Minimum valid pixel value to include in | |
double | p_high |
Maximum valid pixel value to include in | |
Process cubes using a Filter Object.
This class processes an entire cube using an Filter object. That is, it walks a Filter object line-by-line over an input cube. This allows for the development of programs which do spatial filters such as highpass, lowpass, and sharpen. Understanding the Filter class is essential in order to utilize this class. This class expects the user to define an NxM boxcar size. Using that information, a Filter object is created and loaded with the proper cube data in order to walk the NxM boxcar through the entire cube in a very efficient manner. Currently it is required that the following parameters be available in the application XML file: LINES - Defines the height of the boxcar to convolve over the cube SAMPLES - Defines the width of the boxcar to convoled over the cube MINIMUM - Defines the minimum number of pixels in the boxcar in order for statistics to be computed (see Filter class) LOW - Defines minimum valid pixel value to be included in statistics (see Filter class) HIGH - Defines maximum valid pixel value to be included in statistics (see Filter class)
If you would like to see ProcessByQuickFilter being used in implementation, see sharpen.cpp
2003-05-16 Stuart Sides - Modified schema from astrogeology... isis.astrogeology...
2003-06-02 Jeff Anderson - Fixed a bug where line unfolding at the bottom of the cube was always using band 1
2003-08-28 Jeff Anderson - Added SetFilterParameters method
2005-02-08 Elizabeth Ribelin - Modified file to support Doxygen documentation
2006-12-15 Jeff Anderson - Fixed bug for images with 1 line
2011-06-27 Jai Rideout and Steven Lambright - Now uses FilterCachingAlgorithm
2011-08-19 Jeannie Backer - Modified unitTest to use $temporary variable instead of /tmp directory.
2012-02-24 Steven Lambright - Added ProcessCube()
2015-01-15 Sasha Brownsberger - Added virtual keyword to StartProcess function to ensure successful inheritance between Process and its child classes. References #2215.
Definition at line 77 of file ProcessByQuickFilter.h.
Isis::ProcessByQuickFilter::ProcessByQuickFilter | ( | ) |
Constructs a FilterProcess object.
Definition at line 36 of file ProcessByQuickFilter.cpp.
References p_getParametersFromUser, and SetFilterParameters().
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Get the vector of Statistics objects for each band separately of a specified input cube.
index | The index of the input cube in InputCubes |
Definition at line 283 of file Process.h.
References Isis::Process::p_bandStats.
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inherited |
Calculates and stores off statistics on every band of every cube added to this process via the SetInputCube method.
The newly calculated statistics are stored in two ways: as a vector where each entry is a single Statistics object for every band of a particular input cube, and as a vector where each entry is a vector of Statistics objects, for each band separately, of a particular input cube.
Definition at line 721 of file Process.cpp.
References Isis::Statistics::AddData(), Isis::Cube::bandCount(), Isis::Progress::CheckStatus(), Isis::Buffer::DoubleBuffer(), Isis::Cube::lineCount(), Isis::Cube::read(), Isis::LineManager::SetLine(), Isis::Progress::SetMaximumSteps(), Isis::Progress::SetText(), Isis::Buffer::size(), and Isis::toString().
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Close owned cubes from the list and clear the list.
Definition at line 506 of file Process.cpp.
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Close owned input cubes from the list and clear the list.
Definition at line 516 of file Process.cpp.
Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), Isis::FileTool::saveAsReducedCube(), and Isis::ProcessMapMosaic::SetOutputCube().
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Close owned output cubes from the list and clear the list.
Definition at line 530 of file Process.cpp.
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Get the Statistics object for all bands of a specified input cube.
index | The index of the input cube in InputCubes |
Definition at line 297 of file Process.h.
References Isis::Process::p_cubeStats.
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End the processing sequence and cleans up by closing cubes, freeing memory, etc.
Reimplemented in Isis::ProcessImportPds, Isis::ProcessByBrick, Isis::ProcessByBoxcar, Isis::ProcessByTile, Isis::ProcessGroundPolygons, and Isis::ProcessPolygons.
Definition at line 480 of file Process.cpp.
Referenced by Isis::ImageExporter::createWorldFile(), Isis::ProcessByBoxcar::EndProcess(), and Isis::FileTool::saveAsEnlargedCube().
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Cleans up by closing cubes and freeing memory for owned cubes.
Clears the lists for all cubes.
Reimplemented in Isis::ProcessImportPds, Isis::ProcessByBrick, Isis::ProcessByBoxcar, Isis::ProcessByTile, Isis::ProcessGroundPolygons, and Isis::ProcessPolygons.
Definition at line 488 of file Process.cpp.
Referenced by Isis::ProcessByBoxcar::Finalize().
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This method allows the user to input the filter parameters.
Definition at line 206 of file ProcessByQuickFilter.cpp.
References IsisAml::GetDouble(), IsisAml::GetInteger(), Isis::Application::GetUserInterface(), p_boxcarLines, p_boxcarSamples, p_high, p_low, and p_minimum.
Referenced by StartProcess().
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This method reads the mission specific data directory from the user preference file, makes sure that mission is available in the Isis installation, and the attaches the provided input file to the directory in order to create a full file specification.
mission | Name of the mission data directory |
file | Name of the file to attach to the end of the directory |
highestVersion | If set to true the method will return the highest version number of the given file. Therefore, file must contain question marks such as "file???.dat". See the FileName class for more information on versioned files. Defaults to false. |
Definition at line 666 of file Process.cpp.
References _FILEINFO_, and Isis::PvlObject::findGroup().
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This method returns a pointer to a Progress object.
Definition at line 263 of file Process.h.
References Isis::Process::p_progress.
Referenced by Isis::Equalization::calculateStatistics(), Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().
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This method allows the programmer to propagate history to the output cube (default is true)
prop | Flag indicating if history is to be propagated to output cubes. |
Definition at line 635 of file Process.cpp.
Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().
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This method allows the programmer to turn on/off the propagation of labels from the 1st input cube to any of the output cubes.
By default, propagation occurs automatically in the Process class when a call to either of the SetOutputCube methods is invoked. If the program * requires no propagation then utilize this method. This method can be invoked between successive calls of SetOutputCube so that some cube will have labels propagated while others will not.
prop | Flag indicating if labels are be propagated to output cubes. |
Definition at line 552 of file Process.cpp.
Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().
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This method allows the programmer to propagate labels from a specific secondary cube.
cube | IString containing the name of the cube containing the labels to propagate. |
Definition at line 563 of file Process.cpp.
References Isis::PvlObject::addGroup(), Isis::PvlObject::addObject(), Isis::PvlObject::findObject(), Isis::PvlObject::group(), Isis::PvlObject::groups(), and Isis::PvlObject::hasObject().
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This method allows the programmer to propagate original labels to the output cube (default is true)
prop | Flag indicating if original labels is to be propagated to output cubes. |
Definition at line 646 of file Process.cpp.
Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().
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This method allows the programmer to propagate input blobs to the output cube (default is true)
prop | Flag indicating if input blobs are to be propagated to output cubes. |
Definition at line 625 of file Process.cpp.
Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().
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This method allows the programmer to propagate input tables to the output cube (default is true)
prop | Flag indicating if input tables are to be propagated to output cubes. |
Definition at line 591 of file Process.cpp.
Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().
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Propagate the tables from the cube with the given filename to the output cube.
This is done at the time this method is called, not during normal processing.
Definition at line 600 of file Process.cpp.
References Isis::Cube::label(), Isis::PvlObject::object(), Isis::PvlObject::objects(), Isis::Cube::open(), and Isis::Cube::read().
void Isis::ProcessByQuickFilter::SetFilterParameters | ( | int | samples, |
int | lines, | ||
double | low = -DBL_MAX , |
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double | high = DBL_MAX , |
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int | minimum = 0 |
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This method allows the programmer to set the filter parameters.
If this method is not invoked then the parameters will be obtained from the user via the XML parameters indicate in the class description.
samples | Number of samples in the boxcar. Must be odd. |
lines | Number of lines in the boxcar. Must be odd. |
low | Minimum valid pixel value to include in statistical computations of the boxcar. Defaults to -DBL_MAX |
high | Maximum valid pixel value to include in statistical computations of the boxcar. Defaults to DBL_MAX |
minimum | Minimum number of valid pixels in the sample-by-line boxcar in order for statistical computations to be valid. Defaults to 0 |
Definition at line 195 of file ProcessByQuickFilter.cpp.
References p_boxcarLines, p_boxcarSamples, p_getParametersFromUser, p_high, p_low, and p_minimum.
Referenced by ProcessByQuickFilter().
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Opens an input cube specified by the user and verifies requirements are met.
parameter | User parameter to obtain file to open. Typically, the value is "FROM". For example, the user can specify on the command line FROM=myfile.cub and this method will attempt to open the cube "myfile.cub" if the parameter was set to "FROM". |
requirements | Use to specify requirements for the input file. The following are requirments are checked against 1) ic_base::SizeMatch checks to make sure the input cube has the same bands, samples, and lines as the first input cube open using this method, 2) ic_base::SpatialMatch checks to make sure the input cube has the same samples and lines as the first input cube, 3) ic_base::Georeferenced checks to make sure latitude/longitudes can be obtained from the input cube, 4) ic_base::FullyGeoreferenced checks to make sure latitude/longitude, phase/incidence/emission, and other geometric parameters can be obtained from the input cube, 5) ic_base::OneBand checks to make sure the input cube has exactly one band. Note, that these requirements can be logically or'ed. For example, ic_base::SpatialMatch | ic_base::georeferenced. Defaults to 0 |
Isis::iException::Message |
Reimplemented in Isis::ProcessByBrick, Isis::ProcessByLine, Isis::ProcessBySpectra, and Isis::ProcessBySample.
Definition at line 243 of file Process.cpp.
Referenced by Isis::ImageExporter::addChannel(), Isis::FileTool::saveAsEnlargedCube(), and Isis::ProcessGroundPolygons::SetStatCubes().
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Opens an input cube specified by the programmer and verifies requirements are met.
fname | Programmer specified work file. For example, "myfile.cub". |
att | The cube attributes to use when opening the input cube. |
requirements | Same as requirements on SetInputCube. See that method for more details. Defaults to 0 |
Isis::iException::Message |
Reimplemented in Isis::ProcessByBrick.
Definition at line 82 of file Process.cpp.
References _FILEINFO_, Isis::Cube::bandCount(), Isis::CubeAttributeInput::bands(), Isis::Cube::lineCount(), Isis::Cube::open(), Isis::Cube::sampleCount(), and Isis::Cube::setVirtualBands().
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Set the InputCube vector to an opened Cube which was dynamically allocated.
This is used if there already exists a valid opened cube
inCube | - Pointer to input Cube |
Reimplemented in Isis::ProcessByLine.
Definition at line 201 of file Process.cpp.
References _FILEINFO_, and Isis::Cube::isOpen().
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Allocates a user-specified output cube whose size matches the first input cube.
parameter | User specified output file. For example, "TO" is a popular user parameter. If the user specified TO=output.cub, then this routine would allocate the file output.cub with size specified by the first opened input cube. The output pixel type will be propagated from the first loaded input cube or will use the value in the application XML file for pixelType. |
Isis::iException::Message |
Reimplemented in Isis::ProcessMosaic, Isis::ProcessImport, and Isis::ProcessMapMosaic.
Definition at line 266 of file Process.cpp.
References _FILEINFO_.
Referenced by Isis::FileTool::saveAsEnlargedCube(), and Isis::ProcessImport::SetOutputCube().
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Allocates a user specified output cube whose size is specified by the programmer.
parameter | User specified output file. For example, "TO" is a popular user parameter. If the user specified TO=output.cub, then this routine would allocate the file output.cub with size specified by the first opened input cube. The output pixel type will be propagated from the first loaded input cube or will use the value in the application XML file for pixelType. |
ns | Number of samples to allocate |
nl | Number of lines to allocate |
nb | Number of bands to allocate |
Isis::iException::Message |
Definition at line 302 of file Process.cpp.
References _FILEINFO_.
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Allocates a output cube whose name and size is specified by the programmer.
fname | Name of the output cube to allocate |
att | The cube attributes to use when creating the output cube. |
ns | Number of samples to allocate |
nl | Number of lines to allocate |
nb | Number of bands to allocate |
Isis::iException::Message |
Definition at line 334 of file Process.cpp.
References _FILEINFO_, Isis::PvlObject::addGroup(), Isis::PvlObject::addObject(), Isis::AttachedLabel, Isis::CubeAttributeOutput::byteOrder(), Isis::Cube::create(), Isis::CubeAttributeOutput::fileFormat(), Isis::PvlObject::findObject(), Isis::PvlObject::group(), Isis::PvlObject::groups(), Isis::PvlContainer::isNamed(), Isis::Cube::label(), Isis::Cube::labelSize(), Isis::CubeAttributeOutput::maximum(), Isis::CubeAttributeOutput::minimum(), Isis::PvlContainer::name(), Isis::PvlObject::object(), Isis::PvlObject::objects(), Isis::Cube::pixelType(), Isis::CubeAttributeOutput::pixelType(), Isis::CubeAttributeOutput::propagateMinimumMaximum(), Isis::CubeAttributeOutput::propagatePixelType(), Isis::Cube::setBaseMultiplier(), Isis::Cube::setByteOrder(), Isis::Cube::setDimensions(), Isis::Cube::setFormat(), Isis::Cube::setLabelsAttached(), Isis::Cube::setLabelSize(), Isis::Cube::setMinMax(), Isis::Cube::setPixelType(), and Isis::Cube::write().
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This method invokes the process on a line by line basis.
funct | (Isis::Buffer &in, Isis::Buffer &out, Isis::QuickFilter &filter) Name of your processing function |
Isis::IException::Programmer |
Definition at line 49 of file ProcessByQuickFilter.cpp.
References _FILEINFO_, Isis::QuickFilter::AddLine(), Isis::Progress::CheckStatus(), Isis::Buffer::DoubleBuffer(), GetFilterParameters(), Isis::QuickFilter::HalfHeight(), Isis::Process::InputCubes, Isis::Process::OutputCubes, p_boxcarLines, p_boxcarSamples, p_getParametersFromUser, p_high, p_low, p_minimum, Isis::Process::p_progress, Isis::IException::Programmer, Isis::QuickFilter::RemoveLine(), Isis::QuickFilter::Reset(), Isis::LineManager::SetLine(), Isis::Progress::SetMaximumSteps(), Isis::QuickFilter::SetMinimumPixels(), Isis::QuickFilter::SetMinMax(), and Isis::IException::User.
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In the base class, this method will invoked a user-specified function exactly one time.
In derived classes such as ProcessByLine, the StartProcess will invoke a user-specified function for every line in a cube.
funct() | Name of your processing function |
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Writes out the History blob to the cube.
Definition at line 687 of file Process.cpp.
References Isis::History::AddEntry(), Isis::PvlContainer::isNamed(), Isis::PvlObject::object(), Isis::PvlObject::objects(), and Isis::Cube::write().
Referenced by Isis::ImageImporter::import().
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A vector of pointers to opened Cube objects.
The pointers are established in the SetInputCube/SetInputWorkCube methods.
Definition at line 193 of file Process.h.
Referenced by Isis::ProcessExport::CreateWorldFile(), Isis::ProcessExport::GetBuffersBIL(), Isis::ProcessExport::GetBuffersBIP(), Isis::ProcessExport::GetBuffersBSQ(), Isis::ProcessExport::InitProcess(), Isis::ProcessByBrick::ProcessCube(), Isis::ProcessByBrick::ProcessCubes(), Isis::ProcessExport::SetInputRange(), StartProcess(), and Isis::ProcessExport::StartProcess().
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A vector of pointers to allocated Cube objects.
The pointers are established in the SetOutputCube method.
Definition at line 199 of file Process.h.
Referenced by Isis::ProcessImport::ProcessBil(), Isis::ProcessImport::ProcessBip(), Isis::ProcessImport::ProcessBsq(), Isis::ProcessByBrick::ProcessCube(), Isis::ProcessByBrick::ProcessCubes(), Isis::ProcessImport::ProcessJp2(), and StartProcess().
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Holds the calculated statistics for each band separately of every input cubei after the CalculateStatistics method is called.
Definition at line 180 of file Process.h.
Referenced by Isis::Process::BandStatistics().
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Number of lines in the boxcar.
Must be odd.
Definition at line 97 of file ProcessByQuickFilter.h.
Referenced by GetFilterParameters(), SetFilterParameters(), and StartProcess().
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Number of samples in the boxcar.
Must be odd.
Definition at line 95 of file ProcessByQuickFilter.h.
Referenced by GetFilterParameters(), SetFilterParameters(), and StartProcess().
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Holds the calculated statistics for every band together of every input cubei after the CalculateStatistics method is called.
Definition at line 187 of file Process.h.
Referenced by Isis::Process::CubeStatistics().
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Flag to indicate whether or not to get
parameters from the user
Definition at line 93 of file ProcessByQuickFilter.h.
Referenced by ProcessByQuickFilter(), SetFilterParameters(), and StartProcess().
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Maximum valid pixel value to include in
statistical computations of the boxcar.
Defaults to DBL_MAX
Definition at line 106 of file ProcessByQuickFilter.h.
Referenced by GetFilterParameters(), SetFilterParameters(), and StartProcess().
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Minimum valid pixel value to include in
statistical computations of the boxcar.
Defaults to DBL_MAX
Definition at line 103 of file ProcessByQuickFilter.h.
Referenced by GetFilterParameters(), SetFilterParameters(), and StartProcess().
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private |
Minimum number of valid pixels in the
sample-by-line boxcar in order for statistical computations to be valid.
Defaults to 0
Definition at line 99 of file ProcessByQuickFilter.h.
Referenced by GetFilterParameters(), SetFilterParameters(), and StartProcess().
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Pointer to a Progress object.
Definition at line 153 of file Process.h.
Referenced by Isis::ProcessExport::InitProcess(), Isis::ProcessImport::ProcessBil(), Isis::ProcessImport::ProcessBip(), Isis::ProcessImport::ProcessBsq(), Isis::ProcessExport::ProcessExport(), Isis::ProcessImport::ProcessImport(), Isis::ProcessImport::ProcessJp2(), Isis::Process::Progress(), Isis::ProcessByBrick::RunProcess(), StartProcess(), and Isis::ProcessExport::StartProcess().
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