See download stats for: Bioconductor annotation packages Bioconductor experiment packages Bioconductor workflow packages

Download stats for Bioconductor software packages

This page was generated on 2026-08-15 18:53:07 -0400 (Sat, 15 Aug 2026).

The number reported next to each package name is the download score, that is, the average number of distinct IPs that “hit” the package each month for the last 12 months (not counting the current month).

Top 75

1	BiocVersion (74599)
2	BiocGenerics (72505)
3	S4Vectors (69933)
4	IRanges (66273)
5	Biobase (61976)
6	XVector (61789)
7	BiocParallel (60935)
8	SparseArray (57387)
9	Biostrings (56149)
10	GenomicRanges (54836)
11	DelayedArray (54617)
12	SummarizedExperiment (51293)
13	S4Arrays (51024)
14	MatrixGenerics (50805)
15	AnnotationDbi (46042)
16	GenomeInfoDb (45087)
17	KEGGREST (44506)
18	limma (42598)
19	Seqinfo (37411)
20	ggtree (33137)
21	DESeq2 (30968)
22	treeio (30489)
23	Rsamtools (30261)
24	BiocFileCache (30017)
25	UCSC.utils (29982)

26	edgeR (29201)
27	enrichplot (28757)
28	fgsea (28485)
29	Rhdf5lib (27879)
30	clusterProfiler (27813)
31	Rhtslib (27238)
32	DOSE (27183)
33	rhdf5 (26697)
34	qvalue (26395)
35	GOSemSim (26007)
36	GenomicAlignments (25995)
37	rhdf5filters (25077)
38	graph (24805)
39	rtracklayer (24747)
40	biomaRt (24633)
41	zlibbioc (22757)
42	ComplexHeatmap (22745)
43	SingleCellExperiment (22546)
44	BiocIO (22231)
45	annotate (21549)
46	beachmat (20781)
47	sparseMatrixStats (19949)
48	GenomicFeatures (19037)
49	DelayedMatrixStats (18709)
50	HDF5Array (18690)

51	assorthead (18018)
52	preprocessCore (17795)
53	BiocSingular (17155)
54	ScaledMatrix (16308)
55	BiocNeighbors (14843)
56	AnnotationHub (14832)
57	genefilter (14683)
58	GEOquery (14494)
59	BSgenome (14118)
60	multtest (13686)
61	BiocBaseUtils (13643)
62	impute (13639)
63	h5mread (13385)
64	ProtGenerics (13032)
65	cigarillo (12805)
66	AnnotationFilter (12737)
67	GSEABase (12591)
68	scuttle (12522)
69	GSVA (11285)
70	ensembldb (10836)
71	Rgraphviz (10695)
72	scater (10572)
73	sva (10554)
74	RBGL (10435)
75	ExperimentHub (10374)

All software packages

All software package stats in one file: bioc_pkg_stats.tab

All software package download scores in one file: bioc_pkg_scores.tab

See Download stats for Bioconductor software repository (all packages combined)

$

$pkg (1)

*

	**BiocGenerics (1)
	**Biostrings (1)

	**GSVA (1)
	**rhdf5 (1)

**S4Vectors (0)

.

... (1)

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0

	0 (1)
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	0.46.0 (1)

	0000000000000000 (1)
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	00TABLE (0)
	01 (1)
	0mnipathR (1)

1

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	1.36.0 (1)
	1.42.0 (1)
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	1.5.9 (1)
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=

	======= (1)
	================================================================ (1)

	================================================================== (1)
	============================================================================= (1)

A

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	TreeSummarizedExperiment (2928)
	TreeTools (1)
	TREG (259)
	TReNA (8)
	trena (215)
	TrendCatcher (1)
	trendeval (0)
	Trendy (360)
	TRESS (301)
	TREX (0)
	triangle (0)
	tricycle (651)
	TrIdent (148)
	triebeard (1)
	triform (120)
	trigger (254)
	trimcluster (0)
	trio (411)
	tripack (0)
	triplex (502)
	tripr (258)
	tRNA (405)
	tRNAdbImport (336)
	tRNAscanImport (360)
	TRONCO (503)
	TropFishR (0)
	trtf (1)
	trtswitch (1)
	truncash (1)
	TruncatedNormal (1)
	truncdist (1)
	truncnorm (1)
	truncreg (0)
	trust (10)
	tryCatchLog (0)
	TSAR (178)
	tsbox (1)
	TSCAN (843)
	tscR (80)
	TSENAT (15)
	tseries (13)
	tseriesChaos (0)
	tsfeatures (9)
	tsibble (2)
	tsibbledata (0)
	TSIclient (1)
	TSIS (1)
	tsModel (0)
	tsna (0)
	tsne (0)
	tsoutliers (1)
	TSP (46)
	tspair (192)
	TSRchitect (175)
	TSRexploreR (1)
	tsrexplorer (1)
	TSSi (139)
	tsvio (0)
	ttdo (0)
	ttgsea (206)
	TTMap (352)
	TTR (10)
	ttr (1)
	ttservice (1)
	tufte (0)
	tukeytrend (0)
	tune (35)
	tuneR (0)
	tuneRanger (0)
	TurboNorm (451)
	turbonorm (1)
	turner (0)
	Turnover.cells.pSILAC.TMT (0)
	tvR (1)
	TVTB (435)
	twang (3)
	twangContinuous (0)
	tweeDEseq (430)
	tweedie (1)
	tweenr (38)
	twilight (512)
	TwoBit (1)
	twoddpcr (339)
	TwoSampleMR (1)
	twosamples (1)
	txcutr (254)
	TxDb.Athaliana.BioMart.plantsmart22 (1)
	TxDb.Athaliana.BIOMART.plantsmart28 (1)
	TxDb.Celegans.UCSC.ce11.ensGene (1)
	TxDb.Dmelanogaster.UCSC.dm3.ensGene (1)
	TxDb.Dmelanogaster.UCSC.dm6.ensGene (1)
	TxDb.Hsapiens.UCSC.hg18.knownGene (0)
	TxDb.Hsapiens.UCSC.hg19.knownGene (9)
	TXDB.Hsapiens.UCSC.hg19.knownGene (1)
	TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts (1)
	TxDb.Hsapiens.UCSC.hg38.knownGene (2)
	TxDb.Mmusculus.UCSC.mm10.ensGene (1)
	TxDb.Mmusculus.UCSC.mm10.knownGene (6)
	TxDb.Mmusculus.UCSC.mm39.knownGene (1)
	TxDb.Mmusculus.UCSC.mm39.refGene (1)
	TxDb.Mmusculus.UCSC.mm9.knownGene (0)
	TxDb.Rnorvegicus.UCSC.rn6.refGene (1)
	txdbmaker (5850)
	tximeta (1981)
	tximport (5108)
	tximportDat (0)
	tximportData (1)
	TxRegInfra (53)
	txtools (1)
	txtq (0)
	TypeInfo (231)
	tzdb (91)

U

	uatools (0)
	UCell (2776)
	uchardet (1)
	uchm (0)
	ucminf (6)
	ucsc.uti1s (0)
	UCSC.utils (29982)
	Ucsc.utils (0)
	ucsc.utils (1)
	UCSCXenaR (1)
	UCSCXenaTools (1)
	udpipe (1)
	udunits2 (0)
	ufs (0)
	Ularcirc (363)
	umap (1)
	UMI4Cats (341)
	umx (1)
	unbalanced (0)
	uncoverappLib (293)
	UNDO (387)
	Unicode (0)

	unifiedWMWqPCR (323)
	unigd (1)
	unikn (1)
	UniProt.ws (1169)
	uniqueAtomMat (0)
	Uniquorn (384)
	unisets (1)
	unitizer (1)
	units (8)
	universalmotif (1583)
	unix (1)
	unmarked (1)
	unpkg20251204 (1)
	unrtf (1)
	upbm (1)
	UPC (1)
	updateObject (256)
	UPDhmm (188)
	updhmm (1)
	UpSetR (9)
	uqot (0)
	urca (12)

	URD (1)
	urlchecker (1)
	urltools (9)
	URNau (1)
	uroot (0)
	usdm (0)
	usebox (0)
	useful (1)
	usethis (108)
	usmap (1)
	usmapdata (1)
	uSORT (409)
	UTAR (0)
	utf8 (130)
	utils (1)
	utilsRmd (0)
	utilsStuff (0)
	uuid (136)
	uwo (0)
	uwot (78)

V

	V.PhyloMaker2 (0)
	V8 (84)
	VAExprs (239)
	validate (1)
	valr (1)
	VAM (1)
	VanillaICE (665)
	vaplot (1)
	vapour (0)
	VarCon (297)
	variable (1)
	variables (0)
	variancePartition (2288)
	varianPartition (0)
	VariantAnnotation (9708)
	variantannotation (0)
	variantAnnotation (1)
	VariantExperiment (198)
	VariantFiltering (523)
	VariantTools (501)
	varianttools (1)
	VariantWarehouseBMS (0)
	varImp (0)
	vars (0)
	vasp (24)
	VaSP (332)
	vaultr (1)
	vbmp (435)
	VBsparsePCA (0)
	vbzshiny (1)
	VCA (1)
	vcd (1)
	vcdExtra (1)
	VCFArray (357)
	vcfR (1)
	vcr (1)
	vctrs (122)
	vdbR (0)
	vdiffr (1)

	VDJdive (239)
	vector (1)
	Vega (119)
	VegaMC (418)
	vegan (66)
	vegawidget (1)
	velociraptor (399)
	velocyto.R (1)
	veloviz (213)
	vembedr (0)
	vendormetadatahelpers (0)
	venn (7)
	VennDetail (453)
	VennDiagram (2)
	Vennerable (3)
	venneuler (0)
	verification (0)
	verifyr2 (1)
	veriNA3d (1)
	VersionedBiobase (1)
	VERSO (228)
	vetiver (0)
	VGAM (3)
	VGAMextra (0)
	vhydeg (0)
	VIBER (0)
	vicar (1)
	Vicus (1)
	vidger (370)
	ViennaRNA (1)
	VignetteBuilder (1)
	VIM (1)
	vimp (0)
	VineCopula (1)
	vioplot (1)
	vip (10)
	viper (1575)
	VIPER (1)
	Viper (1)

	vipor (4)
	VirFinder (1)
	viridis (104)
	viridisLite (69)
	viridislite (1)
	virtualArray (33)
	visdat (1)
	ViSEAGO (405)
	VISION (2)
	vision (1)
	VisiumIO (345)
	visiumStitched (185)
	visNetwork (7)
	visOmopResults (1)
	visR (1)
	visreg (1)
	vissE (319)
	visse (1)
	VISTA (54)
	vistime (1)
	vitae (0)
	VitessceR (1)
	vitessceR (1)
	vmrseq (172)
	voiDA-data (1)
	volcano3Ddata (1)
	voomCLR (1)
	voxer (1)
	Voyager (383)
	vpc (1)
	VplotR (334)
	vroom (147)
	vscDebugger (1)
	vsclust (253)
	vsearchR (1)
	vsn (6861)
	vtable (1)
	vtpnet (374)
	vulcan (289)

W

	WA43966.shareR.3043877 (0)
	waddR (179)
	waffle (1)
	waiter (11)
	wakefield (0)
	waldo (108)
	wallace (0)
	warning: (1)
	warp (32)
	wasabi (1)
	wateRmelon (1163)
	watermelon (1)
	wavClusteR (424)
	waved (0)
	WaveletComp (0)
	wavelets (1)
	waveslim (0)
	waveTiling (172)
	wavetiling (0)
	wavFeatExt (44)
	wdm (1)
	wdman (0)
	weaver (344)
	webbioc (485)
	webchem (1)
	webdriver (1)
	webfakes (1)
	WebGestaltR (0)
	webmockr (1)
	webp (0)
	WebPower (1)

	webshot (11)
	webshot2 (2)
	websocket (4)
	webutils (1)
	WeightedCluster (0)
	WeightedLowess (1)
	WeightIt (3)
	weights (4)
	WeightSVM (0)
	weitrix (377)
	WES.1KG.WUGSC (0)
	wesanderson (1)
	WGCNA (19)
	WGScan (0)
	wgsim (0)
	WGSmapp (1)
	wheatmap (1)
	WHEN (1)
	whereami (0)
	whisker (20)
	whitebox (1)
	whitening (0)
	whoami (1)
	WhopGenome (1)
	widgetframe (0)
	widgetInvoke (25)
	Widgets (1)
	widgetTools (2099)
	widgettools (1)
	wiggleplotr (411)
	WikidataQueryServiceR (1)

	WikidataR (1)
	WikiPathways (1)
	WikipediR (2)
	wikitaxa (1)
	wildmeta (0)
	winboxr (0)
	withr (127)
	wk (7)
	wmtsa (0)
	WOMBATsport (1)
	worcs (0)
	word2vec (1)
	wordcloud (0)
	wordcloud2 (0)
	workflowr (1)
	workflows (34)
	workflowscriptscommon (1)
	workflowsets (12)
	WorldFlora (0)
	worrms (1)
	wpm (285)
	wppi (167)
	wrapr (0)
	Wrench (2264)
	writexl (30)
	WriteXLS (3)
	wrMisc (0)
	WRS2 (2)
	wSIR (2)
	wutilities (1)

X

	x12 (1)
	x13binary (1)
	xairadiffex (0)
	XAItest (152)
	xaringan (10)
	xaringanExtra (9)
	xaringanthemer (1)
	xbioc (1)
	xBioc (1)
	XBRL (1)
	XBSeq (195)
	xCell (3)
	xCell2 (282)
	XCIR (35)
	xcms (2734)
	XCMS (1)
	xcore (270)
	XDE (553)
	xdg-utils (0)
	XeniumIO (157)
	xeniumR (1)
	xenLite (181)

	XenofilteR (1)
	XERCC (0)
	xergm.common (1)
	Xeva (321)
	xfun (204)
	xgboost (67)
	XGR (1)
	xgxr (1)
	XIFF (0)
	XINA (262)
	XLConnect (1)
	XLConnectJars (1)
	xlsx (1)
	xlsxjars (3)
	XMAP (1)
	xmapbridge (319)
	xmapcore (29)
	XML (61)
	xml2 (124)
	xmlparsedata (1)
	XMLparser (1)
	XMLSchema (1)

	xMSannotator (1)
	XNAString (175)
	xopen (37)
	xportr (1)
	xpose (1)
	xpose.nlmixr2 (1)
	xpose4 (1)
	xps (184)
	xQTLbiolinks (1)
	xrf (0)
	xslt (1)
	xtable (49)
	Xtail (1)
	xtail (3)
	xTail (1)
	XtraSNPlocs.Hsapiens.dbSNP144.GRCh38 (0)
	xts (17)
	XVector (61789)
	xvector (0)
	XVectorb (0)
	XVectors (1)

Y

Z

Stats generated by https://github.com/Bioconductor/download_stats/